HHsearch alignment for GI: 254780163 and conserved domain: COG0466

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].
Probab=98.45  E-value=1e-05  Score=60.21  Aligned_cols=177  Identities=29%  Similarity=0.453  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHHH---CCCCCC---EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHH-----HCCC
Q ss_conf             217899999999862---267787---48966764116689999999985489883452014455404675-----3063
Q gi|254780163|r  207 VGRHEEINRTIQILC---RRSKNN---PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNL-----IAGT  275 (798)
Q Consensus       207 IGRd~EI~riiqIL~---RR~KNn---~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l-----~ag~  275 (798)
T Consensus       326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al----------~RkfvR~sLGGvrDEAEIRGH  395 (782)
T COG0466         326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL----------GRKFVRISLGGVRDEAEIRGH  395 (782)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH----------CCCEEEEECCCCCCHHHHCCC
T ss_conf             6711689999999999986146788579997899887011899999995----------897799954765427775355


Q ss_pred             --CCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCC-HHHH---HHHHHCC-------------CCEEE
Q ss_conf             --431237899999998720389839997361663015544434477-7888---8766302-------------66038
Q gi|254780163|r  276 --RYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVD-ASNL---LKPALSS-------------GAVRC  336 (798)
Q Consensus       276 --~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d-~an~---lkP~L~r-------------g~~~~  336 (798)
T Consensus       396 RRTYIGaMPGrIiQ~mkka~~~-NPv~LLDEIDKm---~ss~r--GDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF  469 (782)
T COG0466         396 RRTYIGAMPGKIIQGMKKAGVK-NPVFLLDEIDKM---GSSFR--GDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF  469 (782)
T ss_pred             CCCCCCCCCHHHHHHHHHHCCC-CCEEEEECHHHC---CCCCC--CCHHHHHHHHCCHHHCCCHHHCCCCCCCCHHHEEE
T ss_conf             3123356872899999986776-874786403331---67777--88688888626976567612220167664432588


Q ss_pred             EEECCHHHHHHHHH-CCHHHHHHCEEEEECCCCHHHHHHHHHH-HHHHHHHHC-----CCEECCHHHHHHHHHHHH
Q ss_conf             87304899999852-0111432001443068786899999986-127665410-----351211178999998654
Q gi|254780163|r  337 IGSTTYSEYRQFFE-KDKALVRRFQKIDVSEPSIEDAIEIVKG-IKPYFEEHH-----QLRYSKEAIRAAVQLSVR  405 (798)
Q Consensus       337 IgatT~~ey~~~~e-~d~al~rrF~~i~v~ep~~~~~~~iL~~-~~~~ye~~h-----~v~~~~~al~~av~ls~r  405 (798)
T Consensus       470 ia--TAN----sl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~