HHsearch alignment for GI: 254780163 and conserved domain: COG0470
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair].
Probab=98.15 E-value=8e-05 Score=53.80 Aligned_cols=118 Identities=30% Similarity=0.368 Sum_probs=75.3
Q ss_pred HHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC------------------------C
Q ss_conf 6534589999999998775204456578740688614320038899999873047------------------------7
Q gi|254780163|r 478 VVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALG------------------------V 533 (798)
Q Consensus 478 ~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~------------------------~ 533 (798)
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~------~~~h-alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG------RLPH-ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHP 74 (325)
T ss_pred CCCCCHHHHHHHHHHHHHCC------CCCC-CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCC
T ss_conf 64332358999999998658------8876-1003799999789999999999658664334552002244432025688
Q ss_pred CEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHH----HCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 3377206886124653011047800025644431003555----158517774044550289999999987775021779
Q gi|254780163|r 534 QLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVD----QNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQS 609 (798)
Q Consensus 534 ~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr----~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~ 609 (798)
T Consensus 75 d~lel~~s~~~~~~------------i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep------ 136 (325)
T COG0470 75 DFLELNPSDLRKID------------IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEP------ 136 (325)
T ss_pred CEEEECCCCCCCCC------------CHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCC------
T ss_conf 65997732133330------------069999999986044656677269997320326988887675433248------
Q ss_pred CCEECCCCEEEEEECC
Q ss_conf 9776125429999424
Q gi|254780163|r 610 GKKISFRNVILIMTTN 625 (798)
Q Consensus 610 Gr~vdf~n~iii~TsN 625 (798)
T Consensus 137 -----~~~~~~il~~n 147 (325)
T COG0470 137 -----PKNTRFILITN 147 (325)
T ss_pred -----CCCEEEEEEEC
T ss_conf -----88716999749