HHsearch alignment for GI: 254780163 and conserved domain: COG0593
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair].
Probab=98.65 E-value=3.4e-06 Score=63.65 Aligned_cols=209 Identities=21% Similarity=0.357 Sum_probs=121.7
Q ss_pred CCEEEE-CCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHH----HHHC-CCCCE-
Q ss_conf 874896-6764116689999999985489883452014455404675306343123789999999----8720-38983-
Q gi|254780163|r 226 NNPLYV-GDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIV----KEIE-SYANA- 298 (798)
Q Consensus 226 Nn~~lv-G~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~----~~~~-~~~~~- 298 (798)
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~-----~a~v~y~~se~f~---------~~~v~a~~~~~~~~Fk~~y-~~d 177 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGP-----NARVVYLTSEDFT---------NDFVKALRDNEMEKFKEKY-SLD 177 (408)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHCC-----CCEEEECCHHHHH---------HHHHHHHHHHHHHHHHHHH-CCC
T ss_conf 895799879999789999999999986299-----8648850489989---------9999998850488888764-267
Q ss_pred EEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEC--CHHHHHHHHHCCHHHHHHCE---EEEECCCCHHHHH
Q ss_conf 999736166301554443447778888766302660388730--48999998520111432001---4430687868999
Q gi|254780163|r 299 ILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGST--TYSEYRQFFEKDKALVRRFQ---KIDVSEPSIEDAI 373 (798)
Q Consensus 299 ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~Igat--T~~ey~~~~e~d~al~rrF~---~i~v~ep~~~~~~ 373 (798)
T Consensus 178 lllIDDiq~l~gk~~~qe---efFh~FN~l~~~~k-qIvltsdr~P~~l~~---~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 178 LLLIDDIQFLAGKERTQE---EFFHTFNALLENGK-QIVLTSDRPPKELNG---LEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred EEEECHHHHHCCCHHHHH---HHHHHHHHHHHCCC-EEEEECCCCCHHHCC---CCHHHHHHHHCEEEEEECCCCHHHHH
T ss_conf 355513867567715799---99999998885088-799970788322110---35889989863057752798889999
Q ss_pred HHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-----------HHHHH-HHHHCCCCH
Q ss_conf 999861276654103512111789999986542015556467988998653333-----------21144-322113657
Q gi|254780163|r 374 EIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQ-----------ILQPL-SKRRKFITE 441 (798)
Q Consensus 374 ~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~-----------~~~~~-~~~~~~~~~ 441 (798)
T Consensus 251 aiL~k----ka~~~~~~i~~ev~~~la~~~~~nvRe--Le-gaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~~-iti 322 (408)
T COG0593 251 AILRK----KAEDRGIEIPDEVLEFLAKRLDRNVRE--LE-GALNRLDAFALFTKRAITIDLVKEILKDLLRAGEK-ITI 322 (408)
T ss_pred HHHHH----HHHHCCCCCCHHHHHHHHHHHHCCHHH--HH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC-CCH
T ss_conf 99999----998658888879999999970030999--99-99999999998538757699999999986401455-899
Q ss_pred HHHHHHHHHCCCCCCHHHHHCCHH
Q ss_conf 899986631024531011100112
Q gi|254780163|r 442 KDIKKTIASMNRSIHTTSFSRDDD 465 (798)
Q Consensus 442 ~~i~~~~~~~~~gip~~~~~~~~~ 465 (798)
T Consensus 323 e~I~~~Va~~y-~v~~~dl~s~~R 345 (408)
T COG0593 323 EDIQKIVAEYY-NVKVSDLLSKSR 345 (408)
T ss_pred HHHHHHHHHHH-CCCHHHHHCCCC
T ss_conf 99999999884-988999624566