HHsearch alignment for GI: 254780163 and conserved domain: COG0703
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism].
Probab=96.77 E-value=0.048 Score=33.84 Aligned_cols=142 Identities=17% Similarity=0.282 Sum_probs=71.4
Q ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHCC--CCCHHHHEEEEEEEEHHHHHCCCCCCCH--HHHHHHHHHHHHCCCCCEEE
Q ss_conf 7874896676411668999999998548--9883452014455404675306343123--78999999987203898399
Q gi|254780163|r 225 KNNPLYVGDPGVGKTAIAEGFAKQIVDG--MVPDILLGARIFSLDMGNLIAGTRYRGD--FEERIKKIVKEIESYANAIL 300 (798)
Q Consensus 225 KNn~~lvG~~gvGktaive~la~~i~~~--~vp~~l~~~~i~~ld~~~l~ag~~~rg~--fe~r~~~~~~~~~~~~~~il 300 (798)
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie--~~~g~sI~eIF~~---~GE~~FR~~E~~vl~~l~~~~~~Vi 76 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIE--KRTGMSIAEIFEE---EGEEGFRRLETEVLKELLEEDNAVI 76 (172)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHH--HHHCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 9618997179997768999999981998022469999--9979699999999---8289999999999999862699599
Q ss_pred EECCHHHHHCCCCCCCCCC-CHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCH-HHHHHHHH
Q ss_conf 9736166301554443447-77888876630-266038873048999998520111432001443068786-89999998
Q gi|254780163|r 301 YIDEIHTLVGAGSASGISV-DASNLLKPALS-SGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSI-EDAIEIVK 377 (798)
Q Consensus 301 fideih~ligag~~~g~~~-d~an~lkP~L~-rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~-~~~~~iL~ 377 (798)
T Consensus 77 ------------aTGGG~v~~~enr--~~l~~~g-~vv~L~~~~e~l~~Rl~~~~-----~RPll~~-~~~~~~l~~L~~ 135 (172)
T COG0703 77 ------------ATGGGAVLSEENR--NLLKKRG-IVVYLDAPFETLYERLQRDR-----KRPLLQT-EDPREELEELLE 135 (172)
T ss_pred ------------ECCCCCCCCHHHH--HHHHHCC-EEEEEECCHHHHHHHHCCCC-----CCCCCCC-CCHHHHHHHHHH
T ss_conf ------------7798611689999--9998488-58999699999999823466-----7986567-776899999999
Q ss_pred HHHHHHHHHCCCEEC
Q ss_conf 612766541035121
Q gi|254780163|r 378 GIKPYFEEHHQLRYS 392 (798)
Q Consensus 378 ~~~~~ye~~h~v~~~ 392 (798)
T Consensus 136 ~R~~~Y~e~a~~~~~ 150 (172)
T COG0703 136 ERQPLYREVADFIID 150 (172)
T ss_pred HHHHHHHHHCCEEEC
T ss_conf 989999972748844