HHsearch alignment for GI: 254780163 and conserved domain: COG1219
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.94 E-value=2.1e-25 Score=201.66 Aligned_cols=271 Identities=30% Similarity=0.438 Sum_probs=198.6
Q ss_pred HHCCHHHHHHHCHHHHHHHHHHH----HHHHHCCCCCCCCC--CCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHH
Q ss_conf 10000246653458999999999----87752044565787--4068861432003889999987304773377206886
Q gi|254780163|r 470 NLEKNLGTVVYGQEEAIKKLSSS----IKIARAGLSDPNKP--IGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEY 543 (798)
Q Consensus 470 ~l~~~l~~~v~GQ~~ai~~v~~~----i~~~~~gl~~~~rP--~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey 543 (798)
T Consensus 54 eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtL 133 (408)
T COG1219 54 EIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTL 133 (408)
T ss_pred HHHHHHHHHEECCHHHHCEEEEEEEHHHHHHHCCCCCCCEEEEECCEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCH
T ss_conf 99998652432625431034664106889986048877635320317998889975779999999984898475144412
Q ss_pred HCCCCCCHHCCCCCHHCCCCCCCCCCHH-------HHHCCCEEEEECCHHHCC-----H---------HHHHHHHHHHHH
Q ss_conf 1246530110478000256444310035-------551585177740445502-----8---------999999998777
Q gi|254780163|r 544 MERHAVSRLIGAPPGYVGFGQGGILADS-------VDQNPYSVVLLDEIEKSH-----P---------DVLNILLQIMDY 602 (798)
Q Consensus 544 ~e~~~vs~LiGappGYvG~~egg~Lte~-------vr~~P~sVvl~DEiEKAh-----~---------~v~~~llqild~ 602 (798)
T Consensus 134 TE-----------AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSen~SITRDVSGEGVQQALLKiiE- 201 (408)
T COG1219 134 TE-----------AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIE- 201 (408)
T ss_pred HH-----------CCCCCHHHHHHHHHHHHHCCCCHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC-
T ss_conf 10-----------663550089999999987645888882885998510254205789872343673589999999970-
Q ss_pred HHCC---CCCCCEECCCCEEEEEECCC-----CH----HH-----HHHCCCCCCCCCCHHHH----H---------HHHH
Q ss_conf 5021---77997761254299994242-----14----55-----33036898821114889----9---------9998
Q gi|254780163|r 603 GILT---DQSGKKISFRNVILIMTTNA-----GA----LE-----MSKARIGFGSSRNDDAD----K---------EALR 652 (798)
Q Consensus 603 G~lt---d~~Gr~vdf~n~iii~TsN~-----G~----~~-----~~~~~~g~~~~~~~~~~----~---------~~l~ 652 (798)
T Consensus 202 GTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvk 281 (408)
T COG1219 202 GTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVK 281 (408)
T ss_pred CCEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHH
T ss_conf 75102399988879842048873763467824401039999998626874245664453444412889987548687887
Q ss_pred HHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHH----HHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 7288788177682896288999999999999999999----999866988999889999999718981015326799999
Q gi|254780163|r 653 NFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLE----LQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIK 728 (798)
Q Consensus 653 ~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~----~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~ 728 (798)
T Consensus 282 FGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E 361 (408)
T COG1219 282 FGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIE 361 (408)
T ss_pred CCCCHHHHCCCCEEEEHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 08838872666326461015999999997265178999999996446916997489999999999984335357999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEEECC
Q ss_conf 862359999996296768884899996078
Q gi|254780163|r 729 EHVKVPLADEILFGKLKKGGGVVKVSLNPD 758 (798)
Q Consensus 729 ~~i~~~la~~il~~~~~~g~~~~~v~~~~~ 758 (798)
T Consensus 362 ~~lld-----~Mf-elPs~~~v~~v~I~~~ 385 (408)
T COG1219 362 ELLLD-----VMF-ELPSLEDVEKVVITEE 385 (408)
T ss_pred HHHHH-----HHH-HCCCCCCCEEEEEEHH
T ss_conf 99999-----885-2788678508997688