HHsearch alignment for GI: 254780163 and conserved domain: COG1222
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.32 E-value=1.3e-10 Score=95.41 Aligned_cols=145 Identities=28% Similarity=0.448 Sum_probs=87.1
Q ss_pred HCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCC----HHH
Q ss_conf 2044565787406886143200388999998730477337720688612465301104780002564443100----355
Q gi|254780163|r 497 RAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILA----DSV 572 (798)
Q Consensus 497 ~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lt----e~v 572 (798)
T Consensus 179 ~~GI~PP---KGVLLY-GPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK------------YiG--EGaRlVRelF~lA 240 (406)
T COG1222 179 ELGIDPP---KGVLLY-GPPGTGKTLLAKAVANQTDATFIRVVGSELVQK------------YIG--EGARLVRELFELA 240 (406)
T ss_pred HCCCCCC---CCEEEE-CCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHH------------HHC--CCHHHHHHHHHHH
T ss_conf 7499999---712766-899975889999987205866999421999999------------834--1169999999987
Q ss_pred HHCCCEEEEECCHHH-----------CCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCC
Q ss_conf 515851777404455-----------028999999998777502177997761254299994242145533036898821
Q gi|254780163|r 573 DQNPYSVVLLDEIEK-----------SHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSS 641 (798)
Q Consensus 573 r~~P~sVvl~DEiEK-----------Ah~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~ 641 (798)
T Consensus 241 rekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~------~nvKVI~ATNR~-------------- 300 (406)
T COG1222 241 REKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR------GNVKVIMATNRP-------------- 300 (406)
T ss_pred HHCCCEEEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC------CCEEEEEECCCC--------------
T ss_conf 414984999831122311113688885099999999999860588978------876899855885--------------
Q ss_pred CCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 11488999998728878817768289628899999999999999999
Q gi|254780163|r 642 RNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKL 688 (798)
Q Consensus 642 ~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l 688 (798)
T Consensus 301 ---D~LDPA---LLRP---GR~DRkIEfplPd~~gR~~Il~IHtrkM 338 (406)
T COG1222 301 ---DILDPA---LLRP---GRFDRKIEFPLPDEEGRAEILKIHTRKM 338 (406)
T ss_pred ---CCCCHH---HCCC---CCCCCEEECCCCCHHHHHHHHHHHHHHC
T ss_conf ---555766---5088---7545301168989789999999876214