HHsearch alignment for GI: 254780163 and conserved domain: COG1223
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only].
Probab=98.80 E-value=2.5e-07 Score=71.80 Aligned_cols=221 Identities=26% Similarity=0.417 Sum_probs=143.4
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC----------CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEE
Q ss_conf 588775486112221789999999986226778----------7489667641166899999999854898834520144
Q gi|254780163|r 194 LTEKVKKGKVDILVGRHEEINRTIQILCRRSKN----------NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARI 263 (798)
Q Consensus 194 LTe~AreGKLDPVIGRd~EI~riiqIL~RR~KN----------n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i 263 (798)
T Consensus 111 ~~e~~~~it~ddViGqEeA-K~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalan---e~kvp-------~ 179 (368)
T COG1223 111 DREIISDITLDDVIGQEEA-KRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALAN---EAKVP-------L 179 (368)
T ss_pred HHHHHCCCCHHHHHCHHHH-HHHHHHHHHHHHCHHHHCCCCCCEEEEECCCCCCHHHHHHHHHC---CCCCC-------E
T ss_conf 5566136617664163988-88879999996496876345754168778999648799998725---45785-------4
Q ss_pred EEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCC-CCCCCCCCCHH---HHHHHHH----CCCCEE
Q ss_conf 554046753063431237899999998720389839997361663015-54443447778---8887663----026603
Q gi|254780163|r 264 FSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGA-GSASGISVDAS---NLLKPAL----SSGAVR 335 (798)
Q Consensus 264 ~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~liga-g~~~g~~~d~a---n~lkP~L----~rg~~~ 335 (798)
T Consensus 180 l~vkat~liG--ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQe-lRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 180 LLVKATELIG--EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQE-LRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred EEECHHHHHH--HHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 8711688888--77435989999999988751984998400245553045788-64549999999998501744577569
Q ss_pred EEEECCHHHHHHHHHCCHHHHHHCE-EEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHH----HHHHHCCCC
Q ss_conf 8873048999998520111432001-44306878689999998612766541035121117899999----865420155
Q gi|254780163|r 336 CIGSTTYSEYRQFFEKDKALVRRFQ-KIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQ----LSVRHFTSR 410 (798)
Q Consensus 336 ~IgatT~~ey~~~~e~d~al~rrF~-~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~----ls~ryi~~r 410 (798)
T Consensus 257 tIaaTN~p~-----~LD~aiRsRFEeEIEF~LP~~eEr~~ile~----y~k~~Plpv~~~-~~~~~~~t~g~SgRdikek 326 (368)
T COG1223 257 TIAATNRPE-----LLDPAIRSRFEEEIEFKLPNDEERLEILEY----YAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEK 326 (368)
T ss_pred EEEECCCHH-----HCCHHHHHHHHHEEEEECCCHHHHHHHHHH----HHHHCCCCCCCC-HHHHHHHHCCCCCHHHHHH
T ss_conf 995059846-----507888865565065648885899999999----898589765568-9999998478772068999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 5646798899865333321144322113657899986631
Q gi|254780163|r 411 KLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIAS 450 (798)
Q Consensus 411 ~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~ 450 (798)
T Consensus 327 vl--------K~a----Lh~Ai~ed~e~v~~edie~al~k 354 (368)
T COG1223 327 VL--------KTA----LHRAIAEDREKVEREDIEKALKK 354 (368)
T ss_pred HH--------HHH----HHHHHHHCHHHHHHHHHHHHHHH
T ss_conf 99--------999----99998713444338899999986