HHsearch alignment for GI: 254780163 and conserved domain: COG1224
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription].
Probab=98.48 E-value=2.2e-05 Score=57.90 Aligned_cols=115 Identities=20% Similarity=0.365 Sum_probs=82.5
Q ss_pred EEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCH
Q ss_conf 17774044550289999999987775021779977612542999942421455330368988211148899999872887
Q gi|254780163|r 578 SVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSP 657 (798)
Q Consensus 578 sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~p 657 (798)
T Consensus 293 GVLFIDEvHmLDIE~FsFlnrAlEse-----------~a-PIii~AtNRG~~kiR----GTd~~sP---------hGIP~ 347 (450)
T COG1224 293 GVLFIDEVHMLDIECFSFLNRALESE-----------LA-PIIILATNRGMTKIR----GTDIESP---------HGIPL 347 (450)
T ss_pred CEEEEECHHHHHHHHHHHHHHHHHCC-----------CC-CEEEEECCCCEEEEC----CCCCCCC---------CCCCH
T ss_conf 42897321345578999999876314-----------67-579997177500121----6677688---------88987
Q ss_pred HHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 8817768289628899999999999999999999986698899988999999971898101532679999986235
Q gi|254780163|r 658 EFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHVKV 733 (798)
Q Consensus 658 eflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~ 733 (798)
T Consensus 348 DlLDRl-lII~t~py~~~EireIi~iRa~e---------e~i~l~~~Ale~L~~ig~e-----tSLRYa~-qLL~p 407 (450)
T COG1224 348 DLLDRL-LIISTRPYSREEIREIIRIRAKE---------EDIELSDDALEYLTDIGEE-----TSLRYAV-QLLTP 407 (450)
T ss_pred HHHHHE-EEEECCCCCHHHHHHHHHHHHHH---------HCCCCCHHHHHHHHHHCHH-----HHHHHHH-HHCCH
T ss_conf 666225-67744779889999999976435---------4030488899999751503-----4489999-86168