HHsearch alignment for GI: 254780163 and conserved domain: COG1419
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion].
Probab=96.93 E-value=0.0012 Score=45.37 Aligned_cols=82 Identities=28% Similarity=0.501 Sum_probs=43.5
Q ss_pred CCCCEEEEECCCCHHHHH-HHHHHH-HH-----CCCCEEEEE---------HHHHHCCCCCCHHCCCCCHHCCCCCCCCC
Q ss_conf 874068861432003889-999987-30-----477337720---------68861246530110478000256444310
Q gi|254780163|r 505 KPIGCYVFSGPTGVGKTE-ISKQLA-FA-----LGVQLLRFD---------MSEYMERHAVSRLIGAPPGYVGFGQGGIL 568 (798)
Q Consensus 505 rP~g~flf~GptGvGKTe-lak~la-~~-----~~~~lir~d---------msey~e~~~vs~LiGappGYvG~~egg~L 568 (798)
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~------im~vp~~vv-~-~~~el 272 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYAD------IMGVPLEVV-Y-SPKEL 272 (407)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHH------HHCCCEEEE-C-CHHHH
T ss_conf 468579998998875887999999999753257606899714411528999999999------869955996-3-99999
Q ss_pred CHHHHH-CCCEEEEECCHHHCCHHHHH
Q ss_conf 035551-58517774044550289999
Q gi|254780163|r 569 ADSVDQ-NPYSVVLLDEIEKSHPDVLN 594 (798)
Q Consensus 569 te~vr~-~P~sVvl~DEiEKAh~~v~~ 594 (798)
T Consensus 273 ~~ai~~l~~~d~ILVDTaGrs~~D~~~ 299 (407)
T COG1419 273 AEAIEALRDCDVILVDTAGRSQYDKEK 299 (407)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCCHHH
T ss_conf 999998531888999689988337899