HHsearch alignment for GI: 254780163 and conserved domain: COG1474

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones].
Probab=98.83  E-value=3.2e-06  Score=63.89  Aligned_cols=229  Identities=17%  Similarity=0.258  Sum_probs=138.8

Q ss_pred             HHHHHHHHHHHHHHHH----CCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCC-C-HHHHEEEEEEEE---HHHHHC---
Q ss_conf             2217899999999862----267787489667641166899999999854898-8-345201445540---467530---
Q gi|254780163|r  206 LVGRHEEINRTIQILC----RRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMV-P-DILLGARIFSLD---MGNLIA---  273 (798)
Q Consensus       206 VIGRd~EI~riiqIL~----RR~KNn~~lvG~~gvGktaive~la~~i~~~~v-p-~~l~~~~i~~ld---~~~l~a---  273 (798)
T Consensus        19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~   98 (366)
T COG1474          19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG   98 (366)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHC
T ss_conf             10348899999999999855899860799889998732899999999973315675799951307878799999999826


Q ss_pred             CCCCCCH-HHHHHHHHHHHHCC-CCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHH-HHCCCCEEEEEECCHHHHHHHHH
Q ss_conf             6343123-78999999987203-898399973616630155444344777888876-63026603887304899999852
Q gi|254780163|r  274 GTRYRGD-FEERIKKIVKEIES-YANAILYIDEIHTLVGAGSASGISVDASNLLKP-ALSSGAVRCIGSTTYSEYRQFFE  350 (798)
Q Consensus       274 g~~~rg~-fe~r~~~~~~~~~~-~~~~ilfideih~ligag~~~g~~~d~an~lkP-~L~rg~~~~IgatT~~ey~~~~e  350 (798)
T Consensus        99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---~~--LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l-  172 (366)
T COG1474          99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---EV--LYSLLRAPGENKVKVSIIAVSNDDKFLDYL-  172 (366)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCC---CH--HHHEECCCCCCCEEEEEEEEECCHHHHHHH-
T ss_conf             899767632689999999777418759999764765415464---14--551112477675379999973548899987-


Q ss_pred             CCHHHHHHCEE--EEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             01114320014--4306878689999998612766541035121117899999865420155564679889986533332
Q gi|254780163|r  351 KDKALVRRFQK--IDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQI  428 (798)
Q Consensus       351 ~d~al~rrF~~--i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~~  428 (798)
T Consensus       173 -d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~--~~~~~~~~~~~vl~lia~~~a~~~GD---AR~aidilr~A~eiA-  245 (366)
T COG1474         173 -DPRVKSSLGPSEIVFPPYTAEELYDILRERVE--EGFSAGVIDDDVLKLIAALVAAESGD---ARKAIDILRRAGEIA-  245 (366)
T ss_pred             -HHHHHHCCCCCEEEECCCCHHHHHHHHHHHHH--HHHCCCCCCHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHH-
T ss_conf             -56676506876355289898999999999998--54046874803999999988761864---776089999999986-


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             1144322113657899986631
Q gi|254780163|r  429 LQPLSKRRKFITEKDIKKTIAS  450 (798)
Q Consensus       429 ~~~~~~~~~~~~~~~i~~~~~~  450 (798)
T Consensus       246 ---e~~~~~~v~~~~v~~a~~~  264 (366)
T COG1474         246 ---EREGSRKVSEDHVREAQEE  264 (366)
T ss_pred             ---HHCCCCCCCHHHHHHHHHH
T ss_conf             ---5407885370047889987