HHsearch alignment for GI: 254780163 and conserved domain: COG1474
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones].
Probab=98.83 E-value=3.2e-06 Score=63.89 Aligned_cols=229 Identities=17% Similarity=0.258 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHHH----CCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCC-C-HHHHEEEEEEEE---HHHHHC---
Q ss_conf 2217899999999862----267787489667641166899999999854898-8-345201445540---467530---
Q gi|254780163|r 206 LVGRHEEINRTIQILC----RRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMV-P-DILLGARIFSLD---MGNLIA--- 273 (798)
Q Consensus 206 VIGRd~EI~riiqIL~----RR~KNn~~lvG~~gvGktaive~la~~i~~~~v-p-~~l~~~~i~~ld---~~~l~a--- 273 (798)
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHC
T ss_conf 10348899999999999855899860799889998732899999999973315675799951307878799999999826
Q ss_pred CCCCCCH-HHHHHHHHHHHHCC-CCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHH-HHCCCCEEEEEECCHHHHHHHHH
Q ss_conf 6343123-78999999987203-898399973616630155444344777888876-63026603887304899999852
Q gi|254780163|r 274 GTRYRGD-FEERIKKIVKEIES-YANAILYIDEIHTLVGAGSASGISVDASNLLKP-ALSSGAVRCIGSTTYSEYRQFFE 350 (798)
Q Consensus 274 g~~~rg~-fe~r~~~~~~~~~~-~~~~ilfideih~ligag~~~g~~~d~an~lkP-~L~rg~~~~IgatT~~ey~~~~e 350 (798)
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---~~--LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l- 172 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---EV--LYSLLRAPGENKVKVSIIAVSNDDKFLDYL- 172 (366)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCC---CH--HHHEECCCCCCCEEEEEEEEECCHHHHHHH-
T ss_conf 899767632689999999777418759999764765415464---14--551112477675379999973548899987-
Q ss_pred CCHHHHHHCEE--EEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 01114320014--4306878689999998612766541035121117899999865420155564679889986533332
Q gi|254780163|r 351 KDKALVRRFQK--IDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDEAGASQI 428 (798)
Q Consensus 351 ~d~al~rrF~~--i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDea~a~~~ 428 (798)
T Consensus 173 -d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~--~~~~~~~~~~~vl~lia~~~a~~~GD---AR~aidilr~A~eiA- 245 (366)
T COG1474 173 -DPRVKSSLGPSEIVFPPYTAEELYDILRERVE--EGFSAGVIDDDVLKLIAALVAAESGD---ARKAIDILRRAGEIA- 245 (366)
T ss_pred -HHHHHHCCCCCEEEECCCCHHHHHHHHHHHHH--HHHCCCCCCHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHH-
T ss_conf -56676506876355289898999999999998--54046874803999999988761864---776089999999986-
Q ss_pred HHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 1144322113657899986631
Q gi|254780163|r 429 LQPLSKRRKFITEKDIKKTIAS 450 (798)
Q Consensus 429 ~~~~~~~~~~~~~~~i~~~~~~ 450 (798)
T Consensus 246 ---e~~~~~~v~~~~v~~a~~~ 264 (366)
T COG1474 246 ---EREGSRKVSEDHVREAQEE 264 (366)
T ss_pred ---HHCCCCCCCHHHHHHHHHH
T ss_conf ---5407885370047889987