HHsearch alignment for GI: 254780163 and conserved domain: COG1484
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair].
Probab=98.41 E-value=2.9e-06 Score=64.19 Aligned_cols=121 Identities=21% Similarity=0.352 Sum_probs=68.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHH-HCCCEEEEEC
Q ss_conf 068861432003889999987304---773377206886124653011047800025644431003555-1585177740
Q gi|254780163|r 508 GCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVD-QNPYSVVLLD 583 (798)
Q Consensus 508 g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr-~~P~sVvl~D 583 (798)
T Consensus 106 ~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~el~~-----~Lk~~------~~~~~~~~~l~~~l~~~dlLIiD 174 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS-----KLKAA------FDEGRLEEKLLRELKKVDLLIID 174 (254)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHH-----HHHHH------HHCCCHHHHHHHHHHHCCEEEEE
T ss_conf 82899899998799999999999998398499988599999-----99998------74552689999887528989982
Q ss_pred CHH--HCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 445--5028999999998777502177997761254299994242145533036898821114889999987
Q gi|254780163|r 584 EIE--KSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRN 653 (798)
Q Consensus 584 EiE--KAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~ 653 (798)
T Consensus 175 DlG~~~~~~~~~~~~~q~I~~r~~~----------~~~-~~tsN~~~~~~~~~-~~~--~~~~e~~~dRi~~ 232 (254)
T COG1484 175 DIGYEPFSQEEADLLFQLISRRYES----------RSL-IITSNLSFGEWDEL-FGD--DALTEALLDRILH 232 (254)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH----------CCC-CEEECCCHHHHHHH-CCC--CCHHHHHHHHHHH
T ss_conf 3677668815587999999999973----------054-20205882788866-067--5116899999986