HHsearch alignment for GI: 254780163 and conserved domain: COG1643

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair].
Probab=96.86  E-value=0.0062  Score=40.22  Aligned_cols=138  Identities=24%  Similarity=0.398  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCE-EEECCCCCHHHHHHHHHH-HHHHC--CCCCHHHHEEEEEEEEHHHHHC---C---
Q ss_conf             222178999999998622677874-896676411668999999-99854--8988345201445540467530---6---
Q gi|254780163|r  205 ILVGRHEEINRTIQILCRRSKNNP-LYVGDPGVGKTAIAEGFA-KQIVD--GMVPDILLGARIFSLDMGNLIA---G---  274 (798)
Q Consensus       205 PVIGRd~EI~riiqIL~RR~KNn~-~lvG~~gvGktaive~la-~~i~~--~~vp~~l~~~~i~~ld~~~l~a---g---  274 (798)
T Consensus        50 Pv~~~~~~i~~ai~------~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I-~~tQPRRlAArsvA~RvAeel~~~~  122 (845)
T COG1643          50 PVTAVRDEILKAIE------QNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKI-GCTQPRRLAARSVAERVAEELGEKL  122 (845)
T ss_pred             CCHHHHHHHHHHHH------HCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEE-EECCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             81888999999998------6978998679988758788999996001668759-9658438999999999999838986


Q ss_pred             ---CCCCCHHHHHH------H-----HHHHHHCC----CCCEEEEECCHHHHHCCCCCCCCCCCH-HHHHHHHHC--CCC
Q ss_conf             ---34312378999------9-----99987203----898399973616630155444344777-888876630--266
Q gi|254780163|r  275 ---TRYRGDFEERI------K-----KIVKEIES----YANAILYIDEIHTLVGAGSASGISVDA-SNLLKPALS--SGA  333 (798)
Q Consensus       275 ---~~~rg~fe~r~------~-----~~~~~~~~----~~~~ilfideih~ligag~~~g~~~d~-an~lkP~L~--rg~  333 (798)
T Consensus       123 G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHER-----Sl--~tDilLgllk~~~~~rr~D  195 (845)
T COG1643         123 GETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHER-----SL--NTDILLGLLKDLLARRRDD  195 (845)
T ss_pred             CCEEEEEEEEECCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECHHHH-----HH--HHHHHHHHHHHHHHHCCCC
T ss_conf             7654379996226787714689514799999843802045877997013355-----68--8899999999998646887


Q ss_pred             EEEEE--ECC-HHHHHHHHHCCHHHH
Q ss_conf             03887--304-899999852011143
Q gi|254780163|r  334 VRCIG--STT-YSEYRQFFEKDKALV  356 (798)
Q Consensus       334 ~~~Ig--atT-~~ey~~~~e~d~al~  356 (798)
T Consensus       196 LKiIimSATld~~rfs~~f~~apvi~  221 (845)
T COG1643         196 LKLIIMSATLDAERFSAYFGNAPVIE  221 (845)
T ss_pred             CEEEEEECCCCHHHHHHHCCCCCEEE
T ss_conf             05999725358899997628998787