HHsearch alignment for GI: 254780163 and conserved domain: COG2204

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].
Probab=99.49  E-value=1.4e-10  Score=95.23  Aligned_cols=347  Identities=20%  Similarity=0.275  Sum_probs=228.4

Q ss_pred             CEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCHHHHHHCEEE--EECCCCHHHHHH
Q ss_conf             839997361663015544434477788887663026603887304899999852011143200144--306878689999
Q gi|254780163|r  297 NAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTTYSEYRQFFEKDKALVRRFQKI--DVSEPSIEDAIE  374 (798)
Q Consensus       297 ~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i--~v~ep~~~~~~~  374 (798)
T Consensus         5 ~~iLvVDD-------------d~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~-----~~lvl~Di~mp-~~~Gl~   65 (464)
T COG2204           5 ARILVVDD-------------DPDIRELLEQALELAGYEVVTAESAEEALEALSESP-----FDLVLLDIRMP-GMDGLE   65 (464)
T ss_pred             CCEEEEEC-------------CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCC-----CCEEEEECCCC-CCCHHH
T ss_conf             87899929-------------789999999999976974898589999999986289-----99899816789-996699


Q ss_pred             HHHHHHHHHHHHCCCEECC-HHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             9986127665410351211-17899999865----420155564679889986533332114432211365789998663
Q gi|254780163|r  375 IVKGIKPYFEEHHQLRYSK-EAIRAAVQLSV----RHFTSRKLPDKAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIA  449 (798)
Q Consensus       375 iL~~~~~~ye~~h~v~~~~-~al~~av~ls~----ryi~~r~lPdkAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~  449 (798)
T Consensus        66 ll~~i~~~~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~---------------  130 (464)
T COG2204          66 LLKEIKSRDPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQRENR---------------  130 (464)
T ss_pred             HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_conf             99999963899988998288999999999855703332189999999999999998765322210---------------


Q ss_pred             HCCCCCCHHHHHCCHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf             10245310111001123342100002466534589999999998775204456578740688614320038899999873
Q gi|254780163|r  450 SMNRSIHTTSFSRDDDSVLSNLEKNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF  529 (798)
Q Consensus       450 ~~~~gip~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~  529 (798)
T Consensus       131 ----------------~-~~~~~~~~~~~liG~S~am~~l~~~i~kv----A~s~a---~VLI~GESGtGKElvAr~IH~  186 (464)
T COG2204         131 ----------------R-SLKRAKSLGGELVGESPAMQQLRRLIAKV----APSDA---SVLITGESGTGKELVARAIHQ  186 (464)
T ss_pred             ----------------H-HHCCCCCCCCCCCCCCHHHHHHHHHHHHH----HCCCC---CEEEECCCCCCHHHHHHHHHH
T ss_conf             ----------------0-00013455677520699999999999998----47799---789977898758999999986


Q ss_pred             HC---CCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCC-------CEEEEECCHHHCCHHHHHHHHHH
Q ss_conf             04---773377206886124653011047800025644431003555158-------51777404455028999999998
Q gi|254780163|r  530 AL---GVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNP-------YSVVLLDEIEKSHPDVLNILLQI  599 (798)
Q Consensus       530 ~~---~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P-------~sVvl~DEiEKAh~~v~~~llqi  599 (798)
T Consensus       187 ~S~R~~~PFVavNcaAip~~l~ESELFGh-------ek-GAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRv  258 (464)
T COG2204         187 ASPRAKGPFIAVNCAAIPENLLESELFGH-------EK-GAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRV  258 (464)
T ss_pred             HCCCCCCCCEEEECCCCCHHHHHHHHHCC-------CC-CCCCCCCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf             07445899256334648988877776145-------65-67677643457615773796587323110999999999999


Q ss_pred             HHHHHCCCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCC-C--CHHH
Q ss_conf             777502177997761254299994242145533036898821114889999987288788177682896288-9--9999
Q gi|254780163|r  600 MDYGILTDQSGKKISFRNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFP-L--SSDI  676 (798)
Q Consensus       600 ld~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~-l--~~~~  676 (798)
T Consensus       259 Lqe~~~~rvG~~~~i~vdvRiIaaT~~dL------------------~~~v~~G~FReDLyyRLnV~~i~iPpLRER~ED  320 (464)
T COG2204         259 LQEREFERVGGNKPIKVDVRIIAATNRDL------------------EEEVAAGRFREDLYYRLNVVPLRLPPLRERKED  320 (464)
T ss_pred             HHCCEEEECCCCCEECEEEEEEEECCCCH------------------HHHHHCCCCHHHHHHHHCCCEECCCCCCCCCHH
T ss_conf             87070673588860000169996057789------------------999881973788886523311048762236200


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9999999999999999866988999889999999718981015326799999862
Q gi|254780163|r  677 IRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLERIIKEHV  731 (798)
Q Consensus       677 ~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i  731 (798)
T Consensus       321 Ip~L~~hfl~~~~~~~~--~~~~~~s~~a~~~L~~y~WPG--NVREL~N~ver~~  371 (464)
T COG2204         321 IPLLAEHFLKRFAAELG--RPPKGFSPEALAALLAYDWPG--NVRELENVVERAV  371 (464)
T ss_pred             HHHHHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHCCCCH--HHHHHHHHHHHHH
T ss_conf             79999999999999809--998887999999997389981--8999999999998