HHsearch alignment for GI: 254780163 and conserved domain: COG2256
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=99.23 E-value=1e-10 Score=96.15 Aligned_cols=188 Identities=22% Similarity=0.341 Sum_probs=121.0
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCCCC
Q ss_conf 66534589999999998775204456578740688614320038899999873047733772068861246530110478
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAP 556 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiGap 556 (798)
T Consensus 24 de~vGQ~HLlg~-~~~lrr~v---~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv----~~gvkdlr--- 90 (436)
T COG2256 24 DEVVGQEHLLGE-GKPLRRAV---E--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV----TSGVKDLR--- 90 (436)
T ss_pred HHHCCHHHHHCC-CCHHHHHH---H--CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCC----CCCHHHHH---
T ss_conf 785571866189-94389999---6--49986057778999888899999987617766995152----34679999---
Q ss_pred CHHCCCCCCCCCCHHHHHCC----CEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHHH
Q ss_conf 00025644431003555158----51777404455028999999998777502177997761254299994242145533
Q gi|254780163|r 557 PGYVGFGQGGILADSVDQNP----YSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEMS 632 (798)
Q Consensus 557 pGYvG~~egg~Lte~vr~~P----~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~~ 632 (798)
T Consensus 91 ----------~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~ii------------lIGATT-------- 140 (436)
T COG2256 91 ----------EIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTII------------LIGATT-------- 140 (436)
T ss_pred ----------HHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHHHCCCEEE------------EEECCC--------
T ss_conf ----------99999999872588349987225333744565510332488689------------996267--------
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHC
Q ss_conf 03689882111488999998728878817768289628899999999999999999999986698899988999999971
Q gi|254780163|r 633 KARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSH 712 (798)
Q Consensus 633 ~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~ 712 (798)
T Consensus 141 --------ENPsF~l--------n~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~--~~~~~i~~~a~~~l~~~ 201 (436)
T COG2256 141 --------ENPSFEL--------NPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLG--GQIIVLDEEALDYLVRL 201 (436)
T ss_pred --------CCCCEEE--------CHHHHHHH-HEEEEECCCHHHHHHHHHHHHHHHHCCCC--CCCCCCCHHHHHHHHHH
T ss_conf --------8987140--------38886110-41565169989999999999865413777--65566888999999986
Q ss_pred CCCCCCCCHHHHHHHHH
Q ss_conf 89810153267999998
Q gi|254780163|r 713 GYDVKMGARPLERIIKE 729 (798)
Q Consensus 713 ~~~~~~GAR~l~r~i~~ 729 (798)
T Consensus 202 s~G---D~R~aLN~LE~ 215 (436)
T COG2256 202 SNG---DARRALNLLEL 215 (436)
T ss_pred CCC---HHHHHHHHHHH
T ss_conf 286---19999889999