HHsearch alignment for GI: 254780163 and conserved domain: COG3283
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism].
Probab=98.35 E-value=6.1e-05 Score=54.68 Aligned_cols=217 Identities=21% Similarity=0.319 Sum_probs=147.2
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH---HCCCCEEEEEHHHHHCCCCCCHHC
Q ss_conf 66534589999999998775204456578740688614320038899999873---047733772068861246530110
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF---ALGVQLLRFDMSEYMERHAVSRLI 553 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~---~~~~~lir~dmsey~e~~~vs~Li 553 (798)
T Consensus 204 ~~~v~~S~~mk~~v~qA~k~-A-ml--DAP---LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElF 276 (511)
T COG3283 204 EQIVAVSPKMKHVVEQAQKL-A-ML--DAP---LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELF 276 (511)
T ss_pred HHHHHCCHHHHHHHHHHHHH-H-CC--CCC---EEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 77873039999999999865-4-03--787---68744888618899998744384558973676447796667677773
Q ss_pred CCCCH---HCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHH
Q ss_conf 47800---025644431003555158517774044550289999999987775021779977612542999942421455
Q gi|254780163|r 554 GAPPG---YVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALE 630 (798)
Q Consensus 554 GappG---YvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~ 630 (798)
T Consensus 277 G~apg~~gk~GffE---------~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~ 347 (511)
T COG3283 277 GHAPGDEGKKGFFE---------QANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVE 347 (511)
T ss_pred CCCCCCCCCCCHHH---------HCCCCEEEEEHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCHHH
T ss_conf 56888777634634---------026974885003324998999999986277600037754578778999616666999
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEE-EECCCC--CHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHH
Q ss_conf 330368988211148899999872887881776828-962889--99999999999999999999866988999889999
Q gi|254780163|r 631 MSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSI-IPFFPL--SSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVIN 707 (798)
Q Consensus 631 ~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~i-i~F~~l--~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~ 707 (798)
T Consensus 348 l------------------v~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~--p~pkl~~~~~~ 407 (511)
T COG3283 348 L------------------VQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGV--PRPKLAADLLT 407 (511)
T ss_pred H------------------HHCCCHHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCC--CCCCCCHHHHH
T ss_conf 9------------------863725887887750134238850006521068999999999997589--98766878999
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 999718981015326799999862
Q gi|254780163|r 708 WLVSHGYDVKMGARPLERIIKEHV 731 (798)
Q Consensus 708 ~l~~~~~~~~~GAR~l~r~i~~~i 731 (798)
T Consensus 408 ~L~~y~WpG--NVRqL~N~iyRA~ 429 (511)
T COG3283 408 VLTRYAWPG--NVRQLKNAIYRAL 429 (511)
T ss_pred HHHHCCCCC--CHHHHHHHHHHHH
T ss_conf 998779996--0999999999999