HHsearch alignment for GI: 254780163 and conserved domain: COG3284
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription].
Probab=98.44 E-value=7.4e-06 Score=61.24 Aligned_cols=215 Identities=18% Similarity=0.289 Sum_probs=136.5
Q ss_pred HCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH--CCCCEEEEEHHHHHCCCCCCHHCCCCC
Q ss_conf 345899999999987752044565787406886143200388999998730--477337720688612465301104780
Q gi|254780163|r 480 YGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFA--LGVQLLRFDMSEYMERHAVSRLIGAPP 557 (798)
Q Consensus 480 ~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~--~~~~lir~dmsey~e~~~vs~LiGapp 557 (798)
T Consensus 316 ~~~d~s~a~l~rk~~rv----~~~~~p---vll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~ 388 (606)
T COG3284 316 PLLDPSRATLLRKAERV----AATDLP---VLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVA 388 (606)
T ss_pred CCCCHHHHHHHHHHHHH----HHCCCC---EEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCC
T ss_conf 45578899999999887----624787---68538765568999999985365569837998503447764677744576
Q ss_pred HH-CCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCC--CCCCCEECCCCEEEEEECCCCHHHHHHC
Q ss_conf 00-25644431003555158517774044550289999999987775021--7799776125429999424214553303
Q gi|254780163|r 558 GY-VGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILT--DQSGKKISFRNVILIMTTNAGALEMSKA 634 (798)
Q Consensus 558 GY-vG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~lt--d~~Gr~vdf~n~iii~TsN~G~~~~~~~ 634 (798)
T Consensus 389 GafTga~~kG~-~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdir---vi~ath~dl~~lv-- 462 (606)
T COG3284 389 GAFTGARRKGY-KGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIR---VIAATHRDLAQLV-- 462 (606)
T ss_pred CCCCCCHHCCC-CCCCEECCCCCCHHHHHHHCHHHHHHHHHHHHHHCCEECCCCCCEEEEEE---EEECCCCCHHHHH--
T ss_conf 56433001066-55410157876089876114189999999998618252358852157799---9834675799998--
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCHHHHCCCCE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCC
Q ss_conf 6898821114889999987288788177682-896288999999999999999999999866988999889999999718
Q gi|254780163|r 635 RIGFGSSRNDDADKEALRNFLSPEFLNRLDS-IIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVSHG 713 (798)
Q Consensus 635 ~~g~~~~~~~~~~~~~l~~~f~peflnRid~-ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~ 713 (798)
T Consensus 463 ----------------~~g~fredLyyrL~~~~i~lP~lr~R~d~-~~--~l~~~~~~--~~~~~~~l~~~~~~~l~~~~ 521 (606)
T COG3284 463 ----------------EQGRFREDLYYRLNAFVITLPPLRERSDR-IP--LLDRILKR--ENDWRLQLDDDALARLLAYR 521 (606)
T ss_pred ----------------HCCCCHHHHHHHHCCEEECCCCHHCCCCC-HH--HHHHHHHH--CCCCCCCCCHHHHHHHHHCC
T ss_conf ----------------75971487888744715506861104665-78--99999987--26877568999999998578
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 98101532679999986
Q gi|254780163|r 714 YDVKMGARPLERIIKEH 730 (798)
Q Consensus 714 ~~~~~GAR~l~r~i~~~ 730 (798)
T Consensus 522 WPG--Nirel~~v~~~~ 536 (606)
T COG3284 522 WPG--NIRELDNVIERL 536 (606)
T ss_pred CCC--CHHHHHHHHHHH
T ss_conf 998--289999999999