HHsearch alignment for GI: 254780163 and conserved domain: COG3604

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms].
Probab=95.64  E-value=0.018  Score=36.86  Aligned_cols=114  Identities=25%  Similarity=0.379  Sum_probs=66.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC-------
Q ss_conf             11222178999999998622--677874896676411668999999998548988345201445540467530-------
Q gi|254780163|r  203 VDILVGRHEEINRTIQILCR--RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA-------  273 (798)
Q Consensus       203 LDPVIGRd~EI~riiqIL~R--R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a-------  273 (798)
T Consensus       222 ~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~-------R~~kPfV~~NCAAlPesLlESEL  294 (550)
T COG3604         222 VGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSP-------RRDKPFVKLNCAALPESLLESEL  294 (550)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC-------CCCCCCEEEECCCCCHHHHHHHH
T ss_conf             45623069999999999998726898079845888538999999987375-------55798666312225378888887


Q ss_pred             ---------CC--CCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCE--------
Q ss_conf             ---------63--43123789999999872038983999736166301554443447778888766302660--------
Q gi|254780163|r  274 ---------GT--RYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAV--------  334 (798)
Q Consensus       274 ---------g~--~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~--------  334 (798)
T Consensus       295 FGHeKGAFTGA~~~r~GrFEl----------AdG-GTLFLDEIGel---------PL~lQaKLLRvLQegEieRvG~~r~  354 (550)
T COG3604         295 FGHEKGAFTGAINTRRGRFEL----------ADG-GTLFLDEIGEL---------PLALQAKLLRVLQEGEIERVGGDRT  354 (550)
T ss_pred             HCCCCCCCCCCHHCCCCCEEE----------CCC-CEEECHHHCCC---------CHHHHHHHHHHHHHCCEEECCCCCE
T ss_conf             453322333510146763565----------579-75760220367---------8778899999986365253479963


Q ss_pred             -----EEEEECCHH
Q ss_conf             -----388730489
Q gi|254780163|r  335 -----RCIGSTTYS  343 (798)
Q Consensus       335 -----~~IgatT~~  343 (798)
T Consensus       355 ikVDVRiIAATNRD  368 (550)
T COG3604         355 IKVDVRVIAATNRD  368 (550)
T ss_pred             EEEEEEEEECCCHH
T ss_conf             67778998213530