HHsearch alignment for GI: 254780163 and conserved domain: COG3604
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms].
Probab=95.64 E-value=0.018 Score=36.86 Aligned_cols=114 Identities=25% Similarity=0.379 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC-------
Q ss_conf 11222178999999998622--677874896676411668999999998548988345201445540467530-------
Q gi|254780163|r 203 VDILVGRHEEINRTIQILCR--RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA------- 273 (798)
Q Consensus 203 LDPVIGRd~EI~riiqIL~R--R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a------- 273 (798)
T Consensus 222 ~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~-------R~~kPfV~~NCAAlPesLlESEL 294 (550)
T COG3604 222 VGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSP-------RRDKPFVKLNCAALPESLLESEL 294 (550)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCC-------CCCCCCEEEECCCCCHHHHHHHH
T ss_conf 45623069999999999998726898079845888538999999987375-------55798666312225378888887
Q ss_pred ---------CC--CCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCE--------
Q ss_conf ---------63--43123789999999872038983999736166301554443447778888766302660--------
Q gi|254780163|r 274 ---------GT--RYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAV-------- 334 (798)
Q Consensus 274 ---------g~--~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~-------- 334 (798)
T Consensus 295 FGHeKGAFTGA~~~r~GrFEl----------AdG-GTLFLDEIGel---------PL~lQaKLLRvLQegEieRvG~~r~ 354 (550)
T COG3604 295 FGHEKGAFTGAINTRRGRFEL----------ADG-GTLFLDEIGEL---------PLALQAKLLRVLQEGEIERVGGDRT 354 (550)
T ss_pred HCCCCCCCCCCHHCCCCCEEE----------CCC-CEEECHHHCCC---------CHHHHHHHHHHHHHCCEEECCCCCE
T ss_conf 453322333510146763565----------579-75760220367---------8778899999986365253479963
Q ss_pred -----EEEEECCHH
Q ss_conf -----388730489
Q gi|254780163|r 335 -----RCIGSTTYS 343 (798)
Q Consensus 335 -----~~IgatT~~ 343 (798)
T Consensus 355 ikVDVRiIAATNRD 368 (550)
T COG3604 355 IKVDVRVIAATNRD 368 (550)
T ss_pred EEEEEEEEECCCHH
T ss_conf 67778998213530