HHsearch alignment for GI: 254780163 and conserved domain: COG3854

Probab=98.17  E-value=2.2e-05  Score=57.85  Aligned_cols=113  Identities=30%  Similarity=0.421  Sum_probs=85.3

Q ss_pred             HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCC----HHHHHHH--
Q ss_conf             9999998622677874896676411668999999998548988345201445540467530634312----3789999--
Q gi|254780163|r  213 INRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRG----DFEERIK--  286 (798)
Q Consensus       213 I~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg----~fe~r~~--  286 (798)
T Consensus       125 ~~~li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~--~~l~kkv~IiDersEIag-~~~gvpq~~~g~R~dVl  201 (308)
T COG3854         125 ANPLIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGIN--QFLPKKVGIIDERSEIAG-CLNGVPQHGRGRRMDVL  201 (308)
T ss_pred             CHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCC--CCCCCEEEEEECCCHHHC-CCCCCCHHHHHHHHHHC
T ss_conf             218899998437224699659988707799999998631511--267732899715004303-43588603232210104


Q ss_pred             -------HHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEC
Q ss_conf             -------999872038983999736166301554443447778888766302660388730
Q gi|254780163|r  287 -------KIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRCIGST  340 (798)
Q Consensus       287 -------~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~Igat  340 (798)
T Consensus       202 d~cpk~~gmmmaIrsm~PEViIvDEIGt----------~~d~~-A~~ta~~~G-Vkli~Ta  250 (308)
T COG3854         202 DPCPKAEGMMMAIRSMSPEVIIVDEIGT----------EEDAL-AILTALHAG-VKLITTA  250 (308)
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEECCCC----------HHHHH-HHHHHHHCC-CEEEEEE
T ss_conf             6561788899999954995799834364----------77799-999998548-5899950