HHsearch alignment for GI: 254780163 and conserved domain: KOG0055

>KOG0055 consensus.
Probab=96.92  E-value=0.0098  Score=38.80  Aligned_cols=90  Identities=30%  Similarity=0.493  Sum_probs=51.9

Q ss_pred             EEEEECCCCHHHHHHHHHHH-HHC-CCCEEEEE------------------------------------------HHHHH
Q ss_conf             68861432003889999987-304-77337720------------------------------------------68861
Q gi|254780163|r  509 CYVFSGPTGVGKTEISKQLA-FAL-GVQLLRFD------------------------------------------MSEYM  544 (798)
Q Consensus       509 ~flf~GptGvGKTelak~la-~~~-~~~lir~d------------------------------------------msey~  544 (798)
T Consensus      1018 TvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~di~~~nl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi 1097 (1228)
T KOG0055        1018 TVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEII 1097 (1228)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHCCEECCCCHHHCCCHHHHHHCCCCCCCHHHHH
T ss_conf             89998899887998999999843888875998783145488799997535303676121041999986268778999999


Q ss_pred             CC---CCCCHHC-CCCCHH---CCCCCCCCCC----------HHHHHCCCEEEEECCHHHCCHH-----HHHHHHHHH
Q ss_conf             24---6530110-478000---2564443100----------3555158517774044550289-----999999987
Q gi|254780163|r  545 ER---HAVSRLI-GAPPGY---VGFGQGGILA----------DSVDQNPYSVVLLDEIEKSHPD-----VLNILLQIM  600 (798)
Q Consensus       545 e~---~~vs~Li-GappGY---vG~~egg~Lt----------e~vr~~P~sVvl~DEiEKAh~~-----v~~~llqil  600 (798)
T Consensus      1098 ~Aak~ANaH~FI~sLP~GyDT~VG-erG~QLSGGQKQRIAIARAilRnP-kILLLDEATSALDseSErvVQeALd~a~ 1173 (1228)
T KOG0055        1098 EAAKLANAHNFISSLPQGYDTRVG-ERGVQLSGGQKQRIAIARAILRNP-KILLLDEATSALDSESERVVQEALDRAM 1173 (1228)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCC-CEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_conf             999971357788608775667567-666747724899999999997299-7654312001101364999999999862