HHsearch alignment for GI: 254780163 and conserved domain: KOG0480
>KOG0480 consensus.
Probab=95.76 E-value=0.18 Score=29.69 Aligned_cols=228 Identities=17% Similarity=0.188 Sum_probs=129.6
Q ss_pred HHHHHHHCCHHHHHHHCHHHHHHHHHHHHHH---HHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHH
Q ss_conf 2334210000246653458999999999877---5204456578740688614320038899999873047733772068
Q gi|254780163|r 465 DSVLSNLEKNLGTVVYGQEEAIKKLSSSIKI---ARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMS 541 (798)
Q Consensus 465 ~~~l~~l~~~l~~~v~GQ~~ai~~v~~~i~~---~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dms 541 (798)
T Consensus 333 ~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYts--- 409 (764)
T KOG0480 333 ENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTS--- 409 (764)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEC---
T ss_conf 22899998763762015389986689998478543578986546773189957997138899999865487315850---
Q ss_pred HHHCCCCCCHHCCCCCHHCCCCCCCCCC-H--HHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCE
Q ss_conf 8612465301104780002564443100-3--555158517774044550289999999987775021779977612542
Q gi|254780163|r 542 EYMERHAVSRLIGAPPGYVGFGQGGILA-D--SVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNV 618 (798)
Q Consensus 542 ey~e~~~vs~LiGappGYvG~~egg~Lt-e--~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~ 618 (798)
T Consensus 410 --GkaSSaAGLTaa---VvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQ--------QtISIaKA 476 (764)
T KOG0480 410 --GKASSAAGLTAA---VVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQ--------QTISIAKA 476 (764)
T ss_pred --CCCCCCCCCEEE---EEECCCCCCEEEECCCEEECCCCEEEECHHCCCCHHHHHHHHHHHHH--------HEEHHEEC
T ss_conf --763443464689---97637777335534737881696688310003570768999999875--------10003302
Q ss_pred EEEEECCCCHHHHHH-CCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEEC-CCCCHHH----HHHHHHHHH-------
Q ss_conf 999942421455330-368988211148899999872887881776828962-8899999----999999999-------
Q gi|254780163|r 619 ILIMTTNAGALEMSK-ARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPF-FPLSSDI----IRQVVHKFI------- 685 (798)
Q Consensus 619 iii~TsN~G~~~~~~-~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F-~~l~~~~----~~~i~~~~l------- 685 (798)
T Consensus 477 Gv~aTLnARtSIlAAANPv~-GhYdR~ktl~eNi--~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~ 553 (764)
T KOG0480 477 GVVATLNARTSILAAANPVG-GHYDRKKTLRENI--NMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATE 553 (764)
T ss_pred CEEEEECCHHHHHHHCCCCC-CCCCCCCCHHHHC--CCCCHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 06886222355555327767-7455330066522--77804542222799993578667779999999987436211023
Q ss_pred -------HHHHH--HHHHCCCEEEECHHHHHHHHHC
Q ss_conf -------99999--9986698899988999999971
Q gi|254780163|r 686 -------MKLEL--QLQEKGISFHFSEEVINWLVSH 712 (798)
Q Consensus 686 -------~~l~~--~l~~~~i~l~~~~~~~~~l~~~ 712 (798)
T Consensus 554 ~~~~~~~e~vrkYi~yA-R~~~P~ls~ea~~~lve~ 588 (764)
T KOG0480 554 RVCVYTLEQVRKYIRYA-RNFKPKLSKEASEMLVEK 588 (764)
T ss_pred CCCCCCHHHHHHHHHHH-HHCCCCCCHHHHHHHHHH
T ss_conf 25666499999999998-753753248999999999