HHsearch alignment for GI: 254780163 and conserved domain: KOG0739

Probab=97.89  E-value=0.00012  Score=52.50  Aligned_cols=184  Identities=23%  Similarity=0.380  Sum_probs=107.1

Q ss_pred             HHHCHHHHHHHHHHHHHHH-H-CC-CCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCHHCC
Q ss_conf             6534589999999998775-2-04-4565787406886143200388999998730477337720688612465301104
Q gi|254780163|r  478 VVYGQEEAIKKLSSSIKIA-R-AG-LSDPNKPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIG  554 (798)
Q Consensus       478 ~v~GQ~~ai~~v~~~i~~~-~-~g-l~~~~rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmsey~e~~~vs~LiG  554 (798)
T Consensus       134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL-----vSKWmG  208 (439)
T KOG0739         134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL-----VSKWMG  208 (439)
T ss_pred             HHCCCHHHHHHHHHHEEECCCCHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHH-----HHHHHC
T ss_conf             301405689998754350002535415887754257886799975779999987414770687301788-----998732


Q ss_pred             CCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHH-----------CCHHHHHHH-HHHHHHHHCCCCCCCEECCCCEEEEE
Q ss_conf             780002564443100355515851777404455-----------028999999-99877750217799776125429999
Q gi|254780163|r  555 APPGYVGFGQGGILADSVDQNPYSVVLLDEIEK-----------SHPDVLNIL-LQIMDYGILTDQSGKKISFRNVILIM  622 (798)
Q Consensus       555 appGYvG~~egg~Lte~vr~~P~sVvl~DEiEK-----------Ah~~v~~~l-lqild~G~ltd~~Gr~vdf~n~iii~  622 (798)
T Consensus       209 ESEkLV-----knLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMq--GVG~d~~g-------vLVLg  274 (439)
T KOG0739         209 ESEKLV-----KNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ--GVGNDNDG-------VLVLG  274 (439)
T ss_pred             CHHHHH-----HHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHH--CCCCCCCC-------EEEEE
T ss_conf             179999-----99999987349947986344443268877711777777778887640--66658886-------48972


Q ss_pred             ECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHH-HHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             424214553303689882111488999998728878817768289628899999999-9999999999999866988999
Q gi|254780163|r  623 TTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQ-VVHKFIMKLELQLQEKGISFHF  701 (798)
Q Consensus       623 TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~-i~~~~l~~l~~~l~~~~i~l~~  701 (798)
T Consensus       275 ATNiP-----------------w~LDsAIRRRFe----kRI-----YIPLPe~~AR~~MF~lhl---------G~tp~~L  319 (439)
T KOG0739         275 ATNIP-----------------WVLDSAIRRRFE----KRI-----YIPLPEAHARARMFKLHL---------GDTPHVL  319 (439)
T ss_pred             CCCCC-----------------HHHHHHHHHHHH----CCE-----ECCCCCHHHHHHHHEECC---------CCCCCCC
T ss_conf             37884-----------------367799998765----023-----010873787655503204---------7886413


Q ss_pred             CHHHHHHHHHC--CCC
Q ss_conf             88999999971--898
Q gi|254780163|r  702 SEEVINWLVSH--GYD  715 (798)
Q Consensus       702 ~~~~~~~l~~~--~~~  715 (798)
T Consensus       320 T~~d~~eL~~kTeGyS  335 (439)
T KOG0739         320 TEQDFKELARKTEGYS  335 (439)
T ss_pred             CHHHHHHHHHHCCCCC
T ss_conf             3566999976437877