HHsearch alignment for GI: 254780163 and conserved domain: PRK00080
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed.
Probab=99.28 E-value=8.8e-11 Score=96.65 Aligned_cols=223 Identities=22% Similarity=0.308 Sum_probs=111.0
Q ss_pred CCHHHHHHHHHHHHHHHHH---HCCCCC---CEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCC
Q ss_conf 6112221789999999986---226778---7489667641166899999999854898834520144554046753063
Q gi|254780163|r 202 KVDILVGRHEEINRTIQIL---CRRSKN---NPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGT 275 (798)
Q Consensus 202 KLDPVIGRd~EI~riiqIL---~RR~KN---n~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~ 275 (798)
T Consensus 23 ~l~efiGQ~~i~~~L-~v~i~Aak~r~e~ldH~Ll~GPPGlGKTTLA~iiA~E~~~----------~~~~tsGP~lek-- 89 (328)
T PRK00080 23 SLDEFIGQEKVKENL-KIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV----------NIRITSGPALEK-- 89 (328)
T ss_pred CHHHCCCHHHHHHHH-HHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC----------CCEECCCCCCCC--
T ss_conf 576635959999999-9999999964999880576588998899999999998688----------815624500167--
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--------------------CCEE
Q ss_conf 43123789999999872038983999736166301554443447778888766302--------------------6603
Q gi|254780163|r 276 RYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSS--------------------GAVR 335 (798)
Q Consensus 276 ~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~r--------------------g~~~ 335 (798)
T Consensus 90 ------~~DL~~iLt~l~--~~dvLFIDEIHRl---------~~~vEE~LY~AMEDf~iDi~iG~g~~Ar~~~i~L~pFT 152 (328)
T PRK00080 90 ------AGDLAALLTNLE--EGDVLFIDEIHRL---------SPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFT 152 (328)
T ss_pred ------HHHHHHHHHHCC--CCCEEEEHHHHHC---------CHHHHHHHHHHHHHCEEEEEECCCCCCEEEECCCCCEE
T ss_conf ------478999996088--7876765065324---------88899885798775234578647865324555899834
Q ss_pred EEEECCHHHHHHHHHCCHHHHHHCEEEE-ECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 8873048999998520111432001443-068786899999986127665410351211178999998654201555646
Q gi|254780163|r 336 CIGSTTYSEYRQFFEKDKALVRRFQKID-VSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPD 414 (798)
Q Consensus 336 ~IgatT~~ey~~~~e~d~al~rrF~~i~-v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPd 414 (798)
T Consensus 153 LIGATTr~g~-----Ls~PLrdRFGi~~~l~~Y~~eeL~~Ii~rsa~~l----~i~i~~~~~~eIA~rS------RGTPR 217 (328)
T PRK00080 153 LIGATTRAGL-----LTSPLRDRFGIVQRLEFYTVEELEKIVKRSARIL----GIEIDEEGALEIARRS------RGTPR 217 (328)
T ss_pred EEECCCCCCC-----CCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHC------CCCCH
T ss_conf 7401367665-----7767897579336634589999999999999983----9887899999999863------89839
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHCCHH
Q ss_conf 7988998653333211443221136578999866310245310111001123342100002
Q gi|254780163|r 415 KAIDVIDEAGASQILQPLSKRRKFITEKDIKKTIASMNRSIHTTSFSRDDDSVLSNLEKNL 475 (798)
Q Consensus 415 kAidllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~~gip~~~~~~~~~~~l~~l~~~l 475 (798)
T Consensus 218 iAnrLLrRvrDfa~v----~~~~~I~~~~~~~aL~~l--~ID~~GLd~~Dr~~L~~l~~~f 272 (328)
T PRK00080 218 IANRLLRRVRDFAQV----KGDGIITREIADKALDML--GVDELGLDEMDRKYLLTIIEKF 272 (328)
T ss_pred HHHHHHHHHHHHHHH----CCCCCCCHHHHHHHHHHC--CCCCCCCCHHHHHHHHHHHHHC
T ss_conf 999999999999998----379965999999999956--9863489988999999999852