HHsearch alignment for GI: 254780163 and conserved domain: PRK00149
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed.
Probab=98.30 E-value=4.7e-05 Score=55.50 Aligned_cols=207 Identities=16% Similarity=0.294 Sum_probs=119.5
Q ss_pred CHHHHHHHCHHHHHH-HHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH-----HCCCCEEEEEHHHHHCC
Q ss_conf 002466534589999-999998775204456578740688614320038899999873-----04773377206886124
Q gi|254780163|r 473 KNLGTVVYGQEEAIK-KLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF-----ALGVQLLRFDMSEYMER 546 (798)
Q Consensus 473 ~~l~~~v~GQ~~ai~-~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~-----~~~~~lir~dmsey~e~ 546 (798)
T Consensus 116 yTFdnFVvG~sN~lA~aAA~~Va------~~pg~~yNPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae~F~~~ 189 (447)
T PRK00149 116 YTFDNFVVGKSNRLAHAAALAVA------ENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVSSEKFTND 189 (447)
T ss_pred CCCCCCEECCCCHHHHHHHHHHH------HCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHH
T ss_conf 60326222698599999999998------376767785589779988788999999999998589972899549999999
Q ss_pred CCCCHHCCCCCHHCCCCCCCCCCHHHH--HCCCEEEEECCHHH--CCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEE
Q ss_conf 653011047800025644431003555--15851777404455--02899999999877750217799776125429999
Q gi|254780163|r 547 HAVSRLIGAPPGYVGFGQGGILADSVD--QNPYSVVLLDEIEK--SHPDVLNILLQIMDYGILTDQSGKKISFRNVILIM 622 (798)
Q Consensus 547 ~~vs~LiGappGYvG~~egg~Lte~vr--~~P~sVvl~DEiEK--Ah~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~ 622 (798)
T Consensus 190 ~v~a-l~-----------~~~-~~~Fr~~yr~~DvLliDDiqfl~gk~~tqeeff~~fn--~l~~~~-k-------qiv~ 246 (447)
T PRK00149 190 FVKA-LR-----------NNA-MEEFKEKYRSVDVLLIDDIQFLAGKEKTQEEFFHTFN--ALHENN-K-------QIVI 246 (447)
T ss_pred HHHH-HH-----------CCC-HHHHHHHHHCCCEEEECHHHHHHCCHHHHHHHHHHHH--HHHHCC-C-------EEEE
T ss_conf 9999-85-----------186-9999999972885432148886055779999999999--999849-9-------6899
Q ss_pred ECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCC--EEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 424214553303689882111488999998728878817768--289628899999999999999999999986698899
Q gi|254780163|r 623 TTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLD--SIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFH 700 (798)
Q Consensus 623 TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid--~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~ 700 (798)
T Consensus 247 tsd~~P~~l---------------------~~l~~rL~SRf~~Gl~~~i~~Pd~e~r~~Il~~k~~-------~~~--~~ 296 (447)
T PRK00149 247 TSDRPPKEL---------------------EGLEDRLRSRFEWGLTVDIEPPDLETRVAILQKKAE-------EEG--IN 296 (447)
T ss_pred ECCCCHHHC---------------------CCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHH-------HCC--CC
T ss_conf 578896765---------------------651177886763762651059999999999999999-------728--99
Q ss_pred ECHHHHHHHHHCCCCCCCCCHHHHHHHHHH----------HHHHHHHHHHC
Q ss_conf 988999999971898101532679999986----------23599999962
Q gi|254780163|r 701 FSEEVINWLVSHGYDVKMGARPLERIIKEH----------VKVPLADEILF 741 (798)
Q Consensus 701 ~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~----------i~~~la~~il~ 741 (798)
T Consensus 297 l~~~v~~~iA~~~~~---nvR~LeGal~~l~a~~~~~~~~i~~~~~~~~l~ 344 (447)
T PRK00149 297 LPNEVLEFIAKRIRS---NIRELEGALNRLVAYASLTGRPITLELAKEALK 344 (447)
T ss_pred CCHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 998999999971268---899999999999999998689999999999999