HHsearch alignment for GI: 254780163 and conserved domain: PRK00440
>PRK00440 rfc replication factor C small subunit; Reviewed.
Probab=99.27 E-value=6.6e-11 Score=97.52 Aligned_cols=173 Identities=21% Similarity=0.381 Sum_probs=108.4
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH---HHC--CCCEEEEEHHHHHCCCCCCH
Q ss_conf 6653458999999999877520445657874068861432003889999987---304--77337720688612465301
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA---FAL--GVQLLRFDMSEYMERHAVSR 551 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la---~~~--~~~lir~dmsey~e~~~vs~ 551 (798)
T Consensus 16 ~di~g~~~~~~~L~~~i~~-------~~~p--hlLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd~r~id~vr~ 86 (318)
T PRK00440 16 DEVVGQEEIVERLKSFVKE-------KNMP--HLLFAGPPGTGKTTAALALARELYGEYWRENFLELNASDERGIDVIRN 86 (318)
T ss_pred HHHCCCHHHHHHHHHHHHC-------CCCC--EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHH
T ss_conf 9941969999999999987-------9986--698889599889999999999976986434768951645667178999
Q ss_pred HCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHH
Q ss_conf 10478000256444310035551585177740445502899999999877750217799776125429999424214553
Q gi|254780163|r 552 LIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEM 631 (798)
Q Consensus 552 LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~ 631 (798)
T Consensus 87 ~i~~---~~-------~~~~~~~~~~kiiiiDE~d~l~~~aq~aL~~~mE~~-----------~~~~~fil~~n~~~ki- 144 (318)
T PRK00440 87 KIKE---FA-------RTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY-----------SQTTRFILSCNYSSKI- 144 (318)
T ss_pred HHHH---HH-------HHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC-----------CCCCEEEEECCCCCCC-
T ss_conf 9999---99-------726778997389998685532255678887643105-----------6662588634883337-
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
Q ss_conf 30368988211148899999872887881776828962889999999999999999999998669889998899999997
Q gi|254780163|r 632 SKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFSEEVINWLVS 711 (798)
Q Consensus 632 ~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~ 711 (798)
T Consensus 145 ----------------i~--------~i~SRc-~~i~f~~~~~~~i~~~L~~----I~---~~E~--i~~~~~~l~~i~~ 190 (318)
T PRK00440 145 ----------------ID--------PIQSRC-AVFRFSPLPKEAVIERLRY----IA---KNEG--LEITDDALEAIYY 190 (318)
T ss_pred ----------------CC--------CHHHHH-EEEECCCCCHHHHHHHHHH----HH---HHCC--CCCCHHHHHHHHH
T ss_conf ----------------61--------556551-0111578999999999999----99---9859--9989999999998
Q ss_pred CCC
Q ss_conf 189
Q gi|254780163|r 712 HGY 714 (798)
Q Consensus 712 ~~~ 714 (798)
T Consensus 191 ~s~ 193 (318)
T PRK00440 191 VSE 193 (318)
T ss_pred HCC
T ss_conf 649