HHsearch alignment for GI: 254780163 and conserved domain: PRK03992
>PRK03992 proteasome-activating nucleotidase; Provisional.
Probab=99.60 E-value=3.7e-13 Score=113.67 Aligned_cols=217 Identities=23% Similarity=0.340 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHHH-------------CCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHH
Q ss_conf 122217899999999862-------------2677874896676411668999999998548988345201445540467
Q gi|254780163|r 204 DILVGRHEEINRTIQILC-------------RRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGN 270 (798)
Q Consensus 204 DPVIGRd~EI~riiqIL~-------------RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~ 270 (798)
T Consensus 132 ~dIGGl~~~k~el~E~velPl~~pe~f~~~Gi~pPkGvLLyGPPGtGKTllAkAvA~e----------~~~~fi~v~~s~ 201 (390)
T PRK03992 132 EDIGGLDEQIREVREAVELPLKNPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE----------TNATFIRVVGSE 201 (390)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH----------HCCCEEEEEHHH
T ss_conf 6614989999999999999865989999769999972786898999789999999987----------488879966799
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCC--HHHHHHHHH-------CCCCEEEEEECC
Q ss_conf 53063431237899999998720389839997361663015544434477--788887663-------026603887304
Q gi|254780163|r 271 LIAGTRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVD--ASNLLKPAL-------SSGAVRCIGSTT 341 (798)
Q Consensus 271 l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d--~an~lkP~L-------~rg~~~~IgatT 341 (798)
T Consensus 202 l~s--k~vGesek~vr~lF~~Ar~~aP~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG~~~~~~V~VIaATN 279 (390)
T PRK03992 202 LVQ--KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATN 279 (390)
T ss_pred HHH--CCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf 752--454179999999999999709908971432566335677888620889999999999744877778827996069
Q ss_pred HHHHHHHHHCCHHHHH--HCE-EEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCH-HHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 8999998520111432--001-4430687868999999861276654103512111-78999998654201555646798
Q gi|254780163|r 342 YSEYRQFFEKDKALVR--RFQ-KIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKE-AIRAAVQLSVRHFTSRKLPDKAI 417 (798)
Q Consensus 342 ~~ey~~~~e~d~al~r--rF~-~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~-al~~av~ls~ryi~~r~lPdkAi 417 (798)
T Consensus 280 rpd-----~LDpAllRpGRFDr~I~iplPd~~~R~~Ilki~~~------~~~l~~dvdl~~lA~~T~G~S------GADI 342 (390)
T PRK03992 280 RPD-----ILDPALLRPGRFDRIIEVPLPDEEGRLEILKIHTR------KMNLADDVDLEELAELTEGAS------GADL 342 (390)
T ss_pred CCH-----HCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHC------CCCCCCCCCHHHHHHHCCCCC------HHHH
T ss_conf 810-----05977754776523887089499999999999847------999998889999997687998------9999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
Q ss_conf 89986533332114432211365789998663102
Q gi|254780163|r 418 DVIDEAGASQILQPLSKRRKFITEKDIKKTIASMN 452 (798)
Q Consensus 418 dllDea~a~~~~~~~~~~~~~~~~~~i~~~~~~~~ 452 (798)
T Consensus 343 ~---~lc~EA~m~Air~~r~~i~~~Df~~Ai~kv~ 374 (390)
T PRK03992 343 K---AICTEAGMFAIRDDRTEVTMEDFLKAIEKVM 374 (390)
T ss_pred H---HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 9---9999999999985898608999999999996