HHsearch alignment for GI: 254780163 and conserved domain: PRK05022
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional.
Probab=99.46 E-value=4.5e-12 Score=105.92 Aligned_cols=215 Identities=22% Similarity=0.347 Sum_probs=158.0
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC---CCCEEEEEHHHHHCCCCCCHHC
Q ss_conf 6653458999999999877520445657874068861432003889999987304---7733772068861246530110
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL---GVQLLRFDMSEYMERHAVSRLI 553 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~---~~~lir~dmsey~e~~~vs~Li 553 (798)
T Consensus 186 ~elIG~S~~m~~l~~~i~~v----A~sd~p---VLI~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~l~EseLF 258 (510)
T PRK05022 186 GEMIGQSPAMQQLKKEIEVV----AASDLN---VLITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPESLAESELF 258 (510)
T ss_pred CCEEECCHHHHHHHHHHHHH----HCCCCC---EEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHC
T ss_conf 97520899999999999999----689998---89889898139999999996688789985788899998567899865
Q ss_pred CCCCHHCCCCCCCCCCHHHHHCC-------CEEEEECCHHHCCHHHHHHHHHHHHHHHCC---CCCCCEECCCCEEEEEE
Q ss_conf 47800025644431003555158-------517774044550289999999987775021---77997761254299994
Q gi|254780163|r 554 GAPPGYVGFGQGGILADSVDQNP-------YSVVLLDEIEKSHPDVLNILLQIMDYGILT---DQSGKKISFRNVILIMT 623 (798)
Q Consensus 554 GappGYvG~~egg~Lte~vr~~P-------~sVvl~DEiEKAh~~v~~~llqild~G~lt---d~~Gr~vdf~n~iii~T 623 (798)
T Consensus 259 Gh~k--------GaFtGA~~~r~G~fe~A~gGTLfLDEI~~Lpl~~Q~KLLrvLq~g~iqrvG~~~~~~vdvR---IIAA 327 (510)
T PRK05022 259 GHVK--------GAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVR---VIAA 327 (510)
T ss_pred CCCC--------CCCCCCCCCCCCCEEECCCCEEEEECHHHCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEE---EEEE
T ss_conf 9777--------8868865567881017789879875745499999999999984795885589946666689---9960
Q ss_pred CCCCHHHHHHCCCCCCCCCCHHHHHHH-HHHHCCHHHHCCCCEEE-ECCCCC--HHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 242145533036898821114889999-98728878817768289-628899--99999999999999999998669889
Q gi|254780163|r 624 TNAGALEMSKARIGFGSSRNDDADKEA-LRNFLSPEFLNRLDSII-PFFPLS--SDIIRQVVHKFIMKLELQLQEKGISF 699 (798)
Q Consensus 624 sN~G~~~~~~~~~g~~~~~~~~~~~~~-l~~~f~peflnRid~ii-~F~~l~--~~~~~~i~~~~l~~l~~~l~~~~i~l 699 (798)
T Consensus 328 Tnrd-------------------L~~~V~~G~FR~DLYyRLsv~~I~vPPLRER~eDI~lLa~~FLe~~~~~~g~~~--~ 386 (510)
T PRK05022 328 TNRD-------------------LREEVLAGRFRADLYHRLSVFPLPVPPLRERGDDVLLLAGYFLEQNRLRLGLSS--L 386 (510)
T ss_pred CCCC-------------------HHHHHHCCCHHHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCC--C
T ss_conf 7835-------------------999988396389999876204034808655554099999999999999829898--9
Q ss_pred EECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 998899999997189810153267999998623
Q gi|254780163|r 700 HFSEEVINWLVSHGYDVKMGARPLERIIKEHVK 732 (798)
Q Consensus 700 ~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~ 732 (798)
T Consensus 387 ~ls~eAl~~L~~Y~WPG--NVRELenvIeRA~l 417 (510)
T PRK05022 387 RLSPDAQAALLQYDWPG--NVRELEHVISRAAL 417 (510)
T ss_pred CCCHHHHHHHHCCCCCC--HHHHHHHHHHHHHH
T ss_conf 88899999997099997--89999999999999