HHsearch alignment for GI: 254780163 and conserved domain: PRK05342
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional.
Probab=99.97 E-value=7.7e-29 Score=226.41 Aligned_cols=268 Identities=28% Similarity=0.471 Sum_probs=198.4
Q ss_pred HHCCHHHHHHHCHHHHHHHHHHHH----HHHHCCCCCCC---CCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHH
Q ss_conf 100002466534589999999998----77520445657---87406886143200388999998730477337720688
Q gi|254780163|r 470 NLEKNLGTVVYGQEEAIKKLSSSI----KIARAGLSDPN---KPIGCYVFSGPTGVGKTEISKQLAFALGVQLLRFDMSE 542 (798)
Q Consensus 470 ~l~~~l~~~v~GQ~~ai~~v~~~i----~~~~~gl~~~~---rP~g~flf~GptGvGKTelak~la~~~~~~lir~dmse 542 (798)
T Consensus 65 eI~~~LD~yVIGQ~~AKk~lsVAvyNHykRi~~~~~~~~~vei~KsNILliGPTG~GKTlla~tLAk~l~vPF~iaDAT~ 144 (411)
T PRK05342 65 EIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRQNGSKSDDVELQKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATT 144 (411)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECE
T ss_conf 99998621402848888999999999999986021335665213453899899997788999999998699989986120
Q ss_pred HHCCCCCCHHCCCCCHHCCCCCCCCCCHH-------HHHCCCEEEEECCHHHCC---------H-----HHHHHHHHHHH
Q ss_conf 61246530110478000256444310035-------551585177740445502---------8-----99999999877
Q gi|254780163|r 543 YMERHAVSRLIGAPPGYVGFGQGGILADS-------VDQNPYSVVLLDEIEKSH---------P-----DVLNILLQIMD 601 (798)
Q Consensus 543 y~e~~~vs~LiGappGYvG~~egg~Lte~-------vr~~P~sVvl~DEiEKAh---------~-----~v~~~llqild 601 (798)
T Consensus 145 lTEa-----------GYVGeDVE~ii~~Llq~Ad~dve~Ae~GIV~IDEIDKIarks~~~s~trDVSgEGVQqaLLkiiE 213 (411)
T PRK05342 145 LTEA-----------GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILE 213 (411)
T ss_pred ECCC-----------CCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 0126-----------74560799999999998288899883682888502345424788888777651248999999875
Q ss_pred HHHCCC---CCCC--------EECCCCEEEEEECCCCHH---------HHHHCCCCCCCCCCHHHH------------HH
Q ss_conf 750217---7997--------761254299994242145---------533036898821114889------------99
Q gi|254780163|r 602 YGILTD---QSGK--------KISFRNVILIMTTNAGAL---------EMSKARIGFGSSRNDDAD------------KE 649 (798)
Q Consensus 602 ~G~ltd---~~Gr--------~vdf~n~iii~TsN~G~~---------~~~~~~~g~~~~~~~~~~------------~~ 649 (798)
T Consensus 214 -Gt~v~vp~~ggrkhp~~~~~~idT~nILFI~g---GAF~GL~~II~~R~~~~~iGF~~~~~~~~~~~~~~~l~~v~p~D 289 (411)
T PRK05342 214 -GTVASVPPQGGRKHPQQEFIQVDTTNILFICG---GAFDGLEKIIKQRLGKSGIGFGAEVKSKDEKDLGELLAQVEPED 289 (411)
T ss_pred -CCEECCCCCCCCCCCCCCEEEEECCCEEEEEC---CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHH
T ss_conf -87141188877778776516761471799911---55335899998635788767788766411000567876279878
Q ss_pred HHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHH----HHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 998728878817768289628899999999999----9999999999866988999889999999718981015326799
Q gi|254780163|r 650 ALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVH----KFIMKLELQLQEKGISFHFSEEVINWLVSHGYDVKMGARPLER 725 (798)
Q Consensus 650 ~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~----~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r 725 (798)
T Consensus 290 Li~fGlIPEfiGRlPViv~L~~L~~~~L~~ILtePkNaLikQY~~LF~~dgV~L~Ft~~AL~~IA~~A~~~~tGARgLRs 369 (411)
T PRK05342 290 LVKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDDALEAIAKKAIERKTGARGLRS 369 (411)
T ss_pred HHHCCCCHHHHCCCCEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 88738837761466405462447999999996587415999999999754967998689999999999984757457799
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECC
Q ss_conf 999862359999996296768884899996078
Q gi|254780163|r 726 IIKEHVKVPLADEILFGKLKKGGGVVKVSLNPD 758 (798)
Q Consensus 726 ~i~~~i~~~la~~il~~~~~~g~~~~~v~~~~~ 758 (798)
T Consensus 370 IlE~iLld-----~MF-elPs~~~v~~v~It~~ 396 (411)
T PRK05342 370 ILEEVLLD-----VMF-ELPSREDVEKVVITEE 396 (411)
T ss_pred HHHHHHHH-----HHC-CCCCCCCCCEEEECHH
T ss_conf 99999788-----754-4889899709998879