HHsearch alignment for GI: 254780163 and conserved domain: PRK05564

>PRK05564 DNA polymerase III subunit delta'; Validated.
Probab=99.18  E-value=2.2e-10  Score=93.72  Aligned_cols=153  Identities=20%  Similarity=0.302  Sum_probs=76.2

Q ss_pred             HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC-CCC--EEEEEHHHHHCCCCCCHHC
Q ss_conf             6653458999999999877520445657874068861432003889999987304-773--3772068861246530110
Q gi|254780163|r  477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL-GVQ--LLRFDMSEYMERHAVSRLI  553 (798)
Q Consensus       477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~-~~~--lir~dmsey~e~~~vs~Li  553 (798)
T Consensus         4 ~~iiGq~~i~~~L~~~i~~~r--------l~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~~-------   68 (313)
T PRK05564          4 RTIIGHENIKNRIDNSIIKGK--------FSHASLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKPI-------   68 (313)
T ss_pred             HHCCCHHHHHHHHHHHHHCCC--------CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECC-------
T ss_conf             232682999999999998799--------87504327999850999999999998289977889865886332-------


Q ss_pred             CCCCHHCCCCCCCCCCHHHHHCCC----EEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHH
Q ss_conf             478000256444310035551585----1777404455028999999998777502177997761254299994242145
Q gi|254780163|r  554 GAPPGYVGFGQGGILADSVDQNPY----SVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGAL  629 (798)
Q Consensus       554 GappGYvG~~egg~Lte~vr~~P~----sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~  629 (798)
T Consensus        69 --~~~~I~vd~IR~l~~~~~~~p~~g~~KV~II~~ae~m~~~AaNALLKtLEEP-----------P~~t~fIL~t~~~--  133 (313)
T PRK05564         69 --NKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYKSEKMTEQAQNAFLKTIEEP-----------PKGVFIILLCENL--  133 (313)
T ss_pred             --CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHCCCCC-----------CCCEEEEEEECCH--
T ss_conf             --2569998999999999840862589569998077775899999984550368-----------9985899864983--


Q ss_pred             HHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf             533036898821114889999987288788177682896288999999999999
Q gi|254780163|r  630 EMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHK  683 (798)
Q Consensus       630 ~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~  683 (798)
T Consensus       134 -----------------------~~lLpTI~SRC-Q~~~f~~l~~~~i~~~L~~  163 (313)
T PRK05564        134 -----------------------EQILDTIKSRC-QIYKLNRLSKEDIEKFISY  163 (313)
T ss_pred             -----------------------HHCCCHHHCCC-EEEECCCCCHHHHHHHHHH
T ss_conf             -----------------------54757787065-3566899899999999998