HHsearch alignment for GI: 254780163 and conserved domain: PRK05564
>PRK05564 DNA polymerase III subunit delta'; Validated.
Probab=99.18 E-value=2.2e-10 Score=93.72 Aligned_cols=153 Identities=20% Similarity=0.302 Sum_probs=76.2
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC-CCC--EEEEEHHHHHCCCCCCHHC
Q ss_conf 6653458999999999877520445657874068861432003889999987304-773--3772068861246530110
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL-GVQ--LLRFDMSEYMERHAVSRLI 553 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~-~~~--lir~dmsey~e~~~vs~Li 553 (798)
T Consensus 4 ~~iiGq~~i~~~L~~~i~~~r--------l~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~D~~~~~~~------- 68 (313)
T PRK05564 4 RTIIGHENIKNRIDNSIIKGK--------FSHASLIVGEDGIGKSILAKEIANKILGKSEQREYVDIIEYKPI------- 68 (313)
T ss_pred HHCCCHHHHHHHHHHHHHCCC--------CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECC-------
T ss_conf 232682999999999998799--------87504327999850999999999998289977889865886332-------
Q ss_pred CCCCHHCCCCCCCCCCHHHHHCCC----EEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHH
Q ss_conf 478000256444310035551585----1777404455028999999998777502177997761254299994242145
Q gi|254780163|r 554 GAPPGYVGFGQGGILADSVDQNPY----SVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGAL 629 (798)
Q Consensus 554 GappGYvG~~egg~Lte~vr~~P~----sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~ 629 (798)
T Consensus 69 --~~~~I~vd~IR~l~~~~~~~p~~g~~KV~II~~ae~m~~~AaNALLKtLEEP-----------P~~t~fIL~t~~~-- 133 (313)
T PRK05564 69 --NKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYKSEKMTEQAQNAFLKTIEEP-----------PKGVFIILLCENL-- 133 (313)
T ss_pred --CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCHHHHHHHHHCCCCC-----------CCCEEEEEEECCH--
T ss_conf --2569998999999999840862589569998077775899999984550368-----------9985899864983--
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 533036898821114889999987288788177682896288999999999999
Q gi|254780163|r 630 EMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHK 683 (798)
Q Consensus 630 ~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~ 683 (798)
T Consensus 134 -----------------------~~lLpTI~SRC-Q~~~f~~l~~~~i~~~L~~ 163 (313)
T PRK05564 134 -----------------------EQILDTIKSRC-QIYKLNRLSKEDIEKFISY 163 (313)
T ss_pred -----------------------HHCCCHHHCCC-EEEECCCCCHHHHHHHHHH
T ss_conf -----------------------54757787065-3566899899999999998