HHsearch alignment for GI: 254780163 and conserved domain: PRK05564
>PRK05564 DNA polymerase III subunit delta'; Validated.
Probab=98.55 E-value=1.3e-05 Score=59.46 Aligned_cols=184 Identities=19% Similarity=0.257 Sum_probs=120.7
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCC-EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHH
Q ss_conf 1122217899999999862267787-489667641166899999999854898834520144554046753063431237
Q gi|254780163|r 203 VDILVGRHEEINRTIQILCRRSKNN-PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDF 281 (798)
Q Consensus 203 LDPVIGRd~EI~riiqIL~RR~KNn-~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~f 281 (798)
T Consensus 3 f~~iiGq~~i~~~L~~~i~~~rl~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~--~D~~~~~~~---~~~~I-~-- 74 (313)
T PRK05564 3 FRTIIGHENIKNRIDNSIIKGKFSHASLIVGEDGIGKSILAKEIANKILGKSEQREY--VDIIEYKPI---NKKSI-G-- 74 (313)
T ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC--CCEEEEECC---CCCCC-C--
T ss_conf 323268299999999999879987504327999850999999999998289977889--865886332---25699-9--
Q ss_pred HHHHHHHHHHHCC----CCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHCCHHH
Q ss_conf 8999999987203----898399973616630155444344777888876630--2660388730489999985201114
Q gi|254780163|r 282 EERIKKIVKEIES----YANAILYIDEIHTLVGAGSASGISVDASNLLKPALS--SGAVRCIGSTTYSEYRQFFEKDKAL 355 (798)
Q Consensus 282 e~r~~~~~~~~~~----~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~--rg~~~~IgatT~~ey~~~~e~d~al 355 (798)
T Consensus 75 vd~IR~l~~~~~~~p~~g~~KV~II~~ae~m---------~~~AaNALLKtLEEPP~~t~fIL~t~~~~--~l---LpTI 140 (313)
T PRK05564 75 VDDIRNIIEEVNKKPYEGDKKVIIIYKSEKM---------TEQAQNAFLKTIEEPPKGVFIILLCENLE--QI---LDTI 140 (313)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCHHHH---------CHHHHHHHHHCCCCCCCCEEEEEEECCHH--HC---CCHH
T ss_conf 8999999999840862589569998077775---------89999998455036899858998649835--47---5778
Q ss_pred HHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 3200144306878689999998612766541035121117899999865420155564679889986
Q gi|254780163|r 356 VRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDE 422 (798)
Q Consensus 356 ~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDe 422 (798)
T Consensus 141 ~SRCQ~~~f~~l~~~~i~~~L~~------~~~~--~~~~~~~~~~~~s~------G~~~~a~~~~~~ 193 (313)
T PRK05564 141 KSRCQIYKLNRLSKEDIEKFISY------KYND--IDEENKNSAIAFSD------GIPGKVEKFIED 193 (313)
T ss_pred HCCCEEEECCCCCHHHHHHHHHH------HCCC--CCHHHHHHHHHHCC------CCHHHHHHHHHH
T ss_conf 70653566899899999999998------6258--99999999999829------987999998405