HHsearch alignment for GI: 254780163 and conserved domain: PRK05642
>PRK05642 DNA replication initiation factor; Validated.
Probab=98.55 E-value=1.3e-05 Score=59.50 Aligned_cols=151 Identities=17% Similarity=0.248 Sum_probs=68.0
Q ss_pred CCEE-EECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 8748-966764116689999999985489883452014455404675306343123789999999872038983999736
Q gi|254780163|r 226 NNPL-YVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIESYANAILYIDE 304 (798)
Q Consensus 226 Nn~~-lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~~~~~ilfide 304 (798)
T Consensus 45 ~~~l~i~G~~G~GKTHLL~A~~~~~~~~-------~~~~~yl~~~~~~~----------~~~~~~~~l~~~-d-~l~IDD 105 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR-------GEPAVYLPLAELLD----------RGPELLDNLEQY-E-LVCIDD 105 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHC-------CCCEEEEEHHHHHH----------HHHHHHHHHHHC-C-EEEEEC
T ss_conf 8838998899998899999999999807-------99679978999875----------449998624227-9-898936
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECC-HHHHHHHHHCCHHHHHHCE---EEEECCCCHHHHHHHHHHHH
Q ss_conf 1663015544434477788887663026603887304-8999998520111432001---44306878689999998612
Q gi|254780163|r 305 IHTLVGAGSASGISVDASNLLKPALSSGAVRCIGSTT-YSEYRQFFEKDKALVRRFQ---KIDVSEPSIEDAIEIVKGIK 380 (798)
Q Consensus 305 ih~ligag~~~g~~~d~an~lkP~L~rg~~~~IgatT-~~ey~~~~e~d~al~rrF~---~i~v~ep~~~~~~~iL~~~~ 380 (798)
T Consensus 106 i~~i~g~~~~e~---~lF~l~N~~~~~~~~llits~~~P~~l~-~~l~--DL~SRl~~~~~~~i~~l~d~~~~~iL~~~a 179 (234)
T PRK05642 106 LDVIAGKADWEE---ALFHLFNRLRDSGRRLLLAASKSPRELP-VKLP--DLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred HHHHCCCHHHHH---HHHHHHHHHHHCCCEEEEECCCCHHHHC-CCHH--HHHHHHHCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 455468859999---9999999999839959995787955523-0016--799999578127514899899999999997
Q ss_pred HHHHHHCCCEECCHHHHHHHHHHHH
Q ss_conf 7665410351211178999998654
Q gi|254780163|r 381 PYFEEHHQLRYSKEAIRAAVQLSVR 405 (798)
Q Consensus 381 ~~ye~~h~v~~~~~al~~av~ls~r 405 (798)
T Consensus 180 ----~~rgi~l~~~v~~yl~~r~~R 200 (234)
T PRK05642 180 ----SRRGLHLTDEVGHFILTRGTR 200 (234)
T ss_pred ----HHCCCCCCHHHHHHHHHHCCC
T ss_conf ----754689998999999997358