HHsearch alignment for GI: 254780163 and conserved domain: PRK05642

>PRK05642 DNA replication initiation factor; Validated.
Probab=98.52  E-value=7.3e-06  Score=61.27  Aligned_cols=185  Identities=18%  Similarity=0.331  Sum_probs=107.6

Q ss_pred             HHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH---HHCCCCEEEEEHHHHHCCCCCC
Q ss_conf             0246653458999999999877520445657874068861432003889999987---3047733772068861246530
Q gi|254780163|r  474 NLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA---FALGVQLLRFDMSEYMERHAVS  550 (798)
Q Consensus       474 ~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la---~~~~~~lir~dmsey~e~~~vs  550 (798)
T Consensus        17 tfdnFi~g~N~~a~~~~~~l~~~-----~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~~~~~~~---   88 (234)
T PRK05642         17 TFANYYPGANAAALGYVERLCEA-----DAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG---   88 (234)
T ss_pred             CHHCCCCCCCHHHHHHHHHHHHC-----CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH---
T ss_conf             73035718759999999998760-----6787788389988999988999999999998079967997899987544---


Q ss_pred             HHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHC--CHH----HHHHHHHHHHHHHCCCCCCCEECCCCEEEEEEC
Q ss_conf             11047800025644431003555158517774044550--289----999999987775021779977612542999942
Q gi|254780163|r  551 RLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKS--HPD----VLNILLQIMDYGILTDQSGKKISFRNVILIMTT  624 (798)
Q Consensus       551 ~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKA--h~~----v~~~llqild~G~ltd~~Gr~vdf~n~iii~Ts  624 (798)
T Consensus        89 ------~~---------~~~~l--~~~d~l~IDDi~~i~g~~~~e~~lF~l~N~~~~~~--------------~~llits  137 (234)
T PRK05642         89 ------PE---------LLDNL--EQYELVCIDDLDVIAGKADWEEALFHLFNRLRDSG--------------RRLLLAA  137 (234)
T ss_pred             ------HH---------HHHHH--HHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHCC--------------CEEEEEC
T ss_conf             ------99---------98624--22798989364554688599999999999999839--------------9599957


Q ss_pred             CCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCC--EEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf             4214553303689882111488999998728878817768--28962889999999999999999999998669889998
Q gi|254780163|r  625 NAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLD--SIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFS  702 (798)
Q Consensus       625 N~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid--~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~  702 (798)
T Consensus       138 ~~~P~~l---------------------~~~l~DL~SRl~~~~~~~i~~l~d~~~~~iL~~~-------a~~rgi--~l~  187 (234)
T PRK05642        138 SKSPREL---------------------PVKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR-------ASRRGL--HLT  187 (234)
T ss_pred             CCCHHHH---------------------CCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHH-------HHHCCC--CCC
T ss_conf             8795552---------------------3001679999957812751489989999999999-------775468--999


Q ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             8999999971898101532679999986
Q gi|254780163|r  703 EEVINWLVSHGYDVKMGARPLERIIKEH  730 (798)
Q Consensus       703 ~~~~~~l~~~~~~~~~GAR~l~r~i~~~  730 (798)
T Consensus       188 ~~v~~yl~~r~~R~-~--~~L~~~l~~L  212 (234)
T PRK05642        188 DEVGHFILTRGTRS-M--SALFDLLERL  212 (234)
T ss_pred             HHHHHHHHHHCCCC-H--HHHHHHHHHH
T ss_conf             89999999973588-9--9999999999