HHsearch alignment for GI: 254780163 and conserved domain: PRK05642
>PRK05642 DNA replication initiation factor; Validated.
Probab=98.52 E-value=7.3e-06 Score=61.27 Aligned_cols=185 Identities=18% Similarity=0.331 Sum_probs=107.6
Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHH---HHCCCCEEEEEHHHHHCCCCCC
Q ss_conf 0246653458999999999877520445657874068861432003889999987---3047733772068861246530
Q gi|254780163|r 474 NLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLA---FALGVQLLRFDMSEYMERHAVS 550 (798)
Q Consensus 474 ~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la---~~~~~~lir~dmsey~e~~~vs 550 (798)
T Consensus 17 tfdnFi~g~N~~a~~~~~~l~~~-----~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~~~~~~~~~--- 88 (234)
T PRK05642 17 TFANYYPGANAAALGYVERLCEA-----DAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--- 88 (234)
T ss_pred CHHCCCCCCCHHHHHHHHHHHHC-----CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH---
T ss_conf 73035718759999999998760-----6787788389988999988999999999998079967997899987544---
Q ss_pred HHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHC--CHH----HHHHHHHHHHHHHCCCCCCCEECCCCEEEEEEC
Q ss_conf 11047800025644431003555158517774044550--289----999999987775021779977612542999942
Q gi|254780163|r 551 RLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKS--HPD----VLNILLQIMDYGILTDQSGKKISFRNVILIMTT 624 (798)
Q Consensus 551 ~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKA--h~~----v~~~llqild~G~ltd~~Gr~vdf~n~iii~Ts 624 (798)
T Consensus 89 ------~~---------~~~~l--~~~d~l~IDDi~~i~g~~~~e~~lF~l~N~~~~~~--------------~~llits 137 (234)
T PRK05642 89 ------PE---------LLDNL--EQYELVCIDDLDVIAGKADWEEALFHLFNRLRDSG--------------RRLLLAA 137 (234)
T ss_pred ------HH---------HHHHH--HHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHCC--------------CEEEEEC
T ss_conf ------99---------98624--22798989364554688599999999999999839--------------9599957
Q ss_pred CCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCC--EEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 4214553303689882111488999998728878817768--28962889999999999999999999998669889998
Q gi|254780163|r 625 NAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLD--SIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHFS 702 (798)
Q Consensus 625 N~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid--~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~ 702 (798)
T Consensus 138 ~~~P~~l---------------------~~~l~DL~SRl~~~~~~~i~~l~d~~~~~iL~~~-------a~~rgi--~l~ 187 (234)
T PRK05642 138 SKSPREL---------------------PVKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR-------ASRRGL--HLT 187 (234)
T ss_pred CCCHHHH---------------------CCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHH-------HHHCCC--CCC
T ss_conf 8795552---------------------3001679999957812751489989999999999-------775468--999
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 8999999971898101532679999986
Q gi|254780163|r 703 EEVINWLVSHGYDVKMGARPLERIIKEH 730 (798)
Q Consensus 703 ~~~~~~l~~~~~~~~~GAR~l~r~i~~~ 730 (798)
T Consensus 188 ~~v~~yl~~r~~R~-~--~~L~~~l~~L 212 (234)
T PRK05642 188 DEVGHFILTRGTRS-M--SALFDLLERL 212 (234)
T ss_pred HHHHHHHHHHCCCC-H--HHHHHHHHHH
T ss_conf 89999999973588-9--9999999999