HHsearch alignment for GI: 254780163 and conserved domain: PRK05707

>PRK05707 DNA polymerase III subunit delta'; Validated.
Probab=97.91  E-value=3.8e-05  Score=56.14  Aligned_cols=159  Identities=17%  Similarity=0.242  Sum_probs=90.0

Q ss_pred             EEEECCCCCHHHHHHHHHHHHHHCCCCCHHH-----------------HEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             4896676411668999999998548988345-----------------20144554046753063431237899999998
Q gi|254780163|r  228 PLYVGDPGVGKTAIAEGFAKQIVDGMVPDIL-----------------LGARIFSLDMGNLIAGTRYRGDFEERIKKIVK  290 (798)
Q Consensus       228 ~~lvG~~gvGktaive~la~~i~~~~vp~~l-----------------~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~  290 (798)
T Consensus        25 ~Lf~G~~G~GK~~lA~~~A~~LlC~~-~~~~~~Cg~C~sC~~~~~~~HPD~~~i~pe~~----~~~I~---IdqIR~l~~   96 (328)
T PRK05707         25 YLLHGPAGIGKRALAERLAAFLLCEA-PQGGGACGSCKGCQLLAAGSHPDNFVLEPEEA----DKPIK---VDQVRELVS   96 (328)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHCCC-CCCCCCCCCCHHHHHHHCCCCCCEEEEECCCC----CCCCC---HHHHHHHHH
T ss_conf             64479998679999999999984899-99989998888999987589998799842666----77697---999999999


Q ss_pred             HHCC----CCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEE
Q ss_conf             7203----8983999736166301554443447778888766302--660388730489999985201114320014430
Q gi|254780163|r  291 EIES----YANAILYIDEIHTLVGAGSASGISVDASNLLKPALSS--GAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDV  364 (798)
Q Consensus       291 ~~~~----~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~r--g~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v  364 (798)
T Consensus        97 ~~~~~~~~g~~KV~iI~~Ae~m---------~~~AaNALLKtLEEPp~~t~fiL~t~~~--~~l---LpTI~SRCq~~~~  162 (328)
T PRK05707         97 FVVQTAQLGGRKVVLIEPAEAM---------NRNAANALLKSLEEPSGQTVLLLISHQP--SRL---LPTIKSRCQQLAC  162 (328)
T ss_pred             HHHHCCCCCCCEEEEEEHHHHH---------CHHHHHHHHHHHHCCCCCEEEEEEECCH--HHC---HHHHHHCCEEEEC
T ss_conf             9831766789579995028773---------8999999999850789875999860993--448---2588741413348


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             6878689999998612766541035121117899999865420155564679889986
Q gi|254780163|r  365 SEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVIDE  422 (798)
Q Consensus       365 ~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllDe  422 (798)
T Consensus       163 ~~p~~e~~~~~L~~~~~--------~~~~~~a~~ll~la~------G~p~~A~~l~~~  206 (328)
T PRK05707        163 PLPSNEPSLQWLQQALP--------ESDAEERIELLTLAA------GSPLRALQLHAQ  206 (328)
T ss_pred             CCCCHHHHHHHHHHHCC--------CCCHHHHHHHHHHCC------CCHHHHHHHHCC
T ss_conf             99899999999997556--------557899999999749------999999987486