HHsearch alignment for GI: 254780163 and conserved domain: PRK06526
>PRK06526 transposase; Provisional.
Probab=98.41 E-value=1.2e-06 Score=66.90 Aligned_cols=69 Identities=26% Similarity=0.541 Sum_probs=32.5
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC---CCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 77874896676411668999999998548988345201445540467530---634312378999999987203898399
Q gi|254780163|r 224 SKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA---GTRYRGDFEERIKKIVKEIESYANAIL 300 (798)
Q Consensus 224 ~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a---g~~~rg~fe~r~~~~~~~~~~~~~~il 300 (798)
T Consensus 97 ~~~Nvil~G~~GtGKThLA~Alg~~A~~-------~G~~v~f~~~~~L~~~L~~a~~~g~~~~~~~~----l~~~--dLL 163 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQ-------AGHRVLFATAAQWVARLAAAHHAGRLQDELVK----LGRI--PLL 163 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHH-------CCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHH----HHCC--CEE
T ss_conf 5887899899998689999999999998-------69967998779999999998855809999998----5136--877
Q ss_pred EECCH
Q ss_conf 97361
Q gi|254780163|r 301 YIDEI 305 (798)
Q Consensus 301 fidei 305 (798)
T Consensus 164 IiDe~ 168 (254)
T PRK06526 164 IVDEV 168 (254)
T ss_pred EEECC
T ss_conf 65021