HHsearch alignment for GI: 254780163 and conserved domain: PRK06871

>PRK06871 DNA polymerase III subunit delta'; Validated.
Probab=97.57  E-value=0.0092  Score=39.00  Aligned_cols=109  Identities=19%  Similarity=0.264  Sum_probs=65.4

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEEHHHHHCCCCCCHH--CCCCCHHC----------CCCCCCCCCH
Q ss_conf             7874068861432003889999987304-773377206886124653011--04780002----------5644431003
Q gi|254780163|r  504 NKPIGCYVFSGPTGVGKTEISKQLAFAL-GVQLLRFDMSEYMERHAVSRL--IGAPPGYV----------GFGQGGILAD  570 (798)
Q Consensus       504 ~rP~g~flf~GptGvGKTelak~la~~~-~~~lir~dmsey~e~~~vs~L--iGappGYv----------G~~egg~Lte  570 (798)
T Consensus        20 ~r~~HA~L~~G~~G~Gk~~la~~~a~~llC~~~~--~-~~~Cg~C~sC~l~~~g~HPD~~~i~~~~~k~I~vd~IR~l~~   96 (324)
T PRK06871         20 GRGHHALLFKADSGLGTEQLIRALAQWLMCQAPG--D-EQPCGQCHSCHLFQAGNHPDFHILEPIDGKDIGVDQVREINE   96 (324)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCC--C-CCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf             9954378768999978999999999998289999--9-998888989999973899987998467888788999999999


Q ss_pred             HHHHCCC----EEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCC
Q ss_conf             5551585----1777404455028999999998777502177997761254299994242
Q gi|254780163|r  571 SVDQNPY----SVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNA  626 (798)
Q Consensus       571 ~vr~~P~----sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~  626 (798)
T Consensus        97 ~~~~~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEPp-----------~~~~fiL~t~~  145 (324)
T PRK06871         97 KVSQFAQQGGNKVVYIQGAERLTEAAANALLKTLEEPR-----------PNTYFLLQADL  145 (324)
T ss_pred             HHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCC-----------CCEEEEEEECC
T ss_conf             98646220596699975888857999999999833898-----------78389998787