HHsearch alignment for GI: 254780163 and conserved domain: PRK06872
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional.
Probab=98.62 E-value=1.5e-07 Score=73.43 Aligned_cols=196 Identities=19% Similarity=0.223 Sum_probs=123.5
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEECCCCCHHHHHHHHHHHHHHCCCC--CHH----------H--HEEE
Q ss_conf 754861122217899999999862267787-489667641166899999999854898--834----------5--2014
Q gi|254780163|r 198 VKKGKVDILVGRHEEINRTIQILCRRSKNN-PLYVGDPGVGKTAIAEGFAKQIVDGMV--PDI----------L--LGAR 262 (798)
Q Consensus 198 AreGKLDPVIGRd~EI~riiqIL~RR~KNn-~~lvG~~gvGktaive~la~~i~~~~v--p~~----------l--~~~~ 262 (798)
T Consensus 10 ~rp~~f~~~vgq~~v~~~l~~a~~~~r~~haylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~c~~i~~g~~~d 89 (696)
T PRK06872 10 WRPKTFSEVVGQEHILTALSNGLKENRLHHAYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECENCKAIEEGNFID 89 (696)
T ss_pred HCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 18875645238599999999999719863047511789888889999999986789999999788862257674478775
Q ss_pred EEEEEHHHHHCCCCCCCHHHHHHHHHHHHHC---CCCC-EEEEECCHHHHHCCCCCCCCCCCHHH-HHHHHHC--CCCEE
Q ss_conf 4554046753063431237899999998720---3898-39997361663015544434477788-8876630--26603
Q gi|254780163|r 263 IFSLDMGNLIAGTRYRGDFEERIKKIVKEIE---SYAN-AILYIDEIHTLVGAGSASGISVDASN-LLKPALS--SGAVR 335 (798)
Q Consensus 263 i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~---~~~~-~ilfideih~ligag~~~g~~~d~an-~lkP~L~--rg~~~ 335 (798)
T Consensus 90 ~~eidaas~---~---~--v~~~r~l~~~~~~~p~~~~~kvy~idevhmls---------~~~fnallk-tleepp~~v~ 151 (696)
T PRK06872 90 LIEIDAASR---T---K--VEDTRELLDNVQYKPVVGRFKVYLIDEVHMLS---------RHSFNALLK-TLEEPPEYVK 151 (696)
T ss_pred EEEEECCCC---C---C--HHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCC---------HHHHHHHHH-HHCCCCCCEE
T ss_conf 467505655---7---8--89999999845457767754799970054438---------999999987-5027975448
Q ss_pred EEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 88730489999985201114320014430687868999999861276654103512111789999986542015556467
Q gi|254780163|r 336 CIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDK 415 (798)
Q Consensus 336 ~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdk 415 (798)
T Consensus 152 f~latt~~--~k~--p~tilsrc-~~f~~~~~~~~~i~~~l~~i~----~~e~~~~~~~al~~~a~~a~gs~rd------ 216 (696)
T PRK06872 152 FLLATTDP--QKL--PITILSRC-MQFHLKALDQTQIAQHLEFIL----TQENIPFESPALEKLAKAAQGSIRD------ 216 (696)
T ss_pred EEEECCCH--HHC--CHHHHHHH-HHEECCCCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHCCCCHHH------
T ss_conf 99843863--227--48898766-530026899999999999999----9849977999999999975895677------
Q ss_pred HHHHHHHHHHH
Q ss_conf 98899865333
Q gi|254780163|r 416 AIDVIDEAGAS 426 (798)
Q Consensus 416 AidllDea~a~ 426 (798)
T Consensus 217 alsl~dqai~~ 227 (696)
T PRK06872 217 SLSLTDQAIAM 227 (696)
T ss_pred HHHHHHHHHHH
T ss_conf 88899999997