HHsearch alignment for GI: 254780163 and conserved domain: PRK06872

>PRK06872 DNA polymerase III subunits gamma and tau; Provisional.
Probab=98.62  E-value=1.5e-07  Score=73.43  Aligned_cols=196  Identities=19%  Similarity=0.223  Sum_probs=123.5

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEECCCCCHHHHHHHHHHHHHHCCCC--CHH----------H--HEEE
Q ss_conf             754861122217899999999862267787-489667641166899999999854898--834----------5--2014
Q gi|254780163|r  198 VKKGKVDILVGRHEEINRTIQILCRRSKNN-PLYVGDPGVGKTAIAEGFAKQIVDGMV--PDI----------L--LGAR  262 (798)
Q Consensus       198 AreGKLDPVIGRd~EI~riiqIL~RR~KNn-~~lvG~~gvGktaive~la~~i~~~~v--p~~----------l--~~~~  262 (798)
T Consensus        10 ~rp~~f~~~vgq~~v~~~l~~a~~~~r~~haylf~g~rg~gktt~ari~ak~lnc~~~~~~~pcg~c~~c~~i~~g~~~d   89 (696)
T PRK06872         10 WRPKTFSEVVGQEHILTALSNGLKENRLHHAYLFSGTRGVGKTSIARLFAKGLNCVHGVTATPCGECENCKAIEEGNFID   89 (696)
T ss_pred             HCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf             18875645238599999999999719863047511789888889999999986789999999788862257674478775


Q ss_pred             EEEEEHHHHHCCCCCCCHHHHHHHHHHHHHC---CCCC-EEEEECCHHHHHCCCCCCCCCCCHHH-HHHHHHC--CCCEE
Q ss_conf             4554046753063431237899999998720---3898-39997361663015544434477788-8876630--26603
Q gi|254780163|r  263 IFSLDMGNLIAGTRYRGDFEERIKKIVKEIE---SYAN-AILYIDEIHTLVGAGSASGISVDASN-LLKPALS--SGAVR  335 (798)
Q Consensus       263 i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~---~~~~-~ilfideih~ligag~~~g~~~d~an-~lkP~L~--rg~~~  335 (798)
T Consensus        90 ~~eidaas~---~---~--v~~~r~l~~~~~~~p~~~~~kvy~idevhmls---------~~~fnallk-tleepp~~v~  151 (696)
T PRK06872         90 LIEIDAASR---T---K--VEDTRELLDNVQYKPVVGRFKVYLIDEVHMLS---------RHSFNALLK-TLEEPPEYVK  151 (696)
T ss_pred             EEEEECCCC---C---C--HHHHHHHHHHCCCCCCCCCEEEEEEEHHHHCC---------HHHHHHHHH-HHCCCCCCEE
T ss_conf             467505655---7---8--89999999845457767754799970054438---------999999987-5027975448


Q ss_pred             EEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             88730489999985201114320014430687868999999861276654103512111789999986542015556467
Q gi|254780163|r  336 CIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDK  415 (798)
Q Consensus       336 ~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdk  415 (798)
T Consensus       152 f~latt~~--~k~--p~tilsrc-~~f~~~~~~~~~i~~~l~~i~----~~e~~~~~~~al~~~a~~a~gs~rd------  216 (696)
T PRK06872        152 FLLATTDP--QKL--PITILSRC-MQFHLKALDQTQIAQHLEFIL----TQENIPFESPALEKLAKAAQGSIRD------  216 (696)
T ss_pred             EEEECCCH--HHC--CHHHHHHH-HHEECCCCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHCCCCHHH------
T ss_conf             99843863--227--48898766-530026899999999999999----9849977999999999975895677------


Q ss_pred             HHHHHHHHHHH
Q ss_conf             98899865333
Q gi|254780163|r  416 AIDVIDEAGAS  426 (798)
Q Consensus       416 AidllDea~a~  426 (798)
T Consensus       217 alsl~dqai~~  227 (696)
T PRK06872        217 SLSLTDQAIAM  227 (696)
T ss_pred             HHHHHHHHHHH
T ss_conf             88899999997