HHsearch alignment for GI: 254780163 and conserved domain: PRK07471
>PRK07471 DNA polymerase III subunit delta'; Validated.
Probab=98.17 E-value=0.00051 Score=48.03 Aligned_cols=191 Identities=16% Similarity=0.182 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCE-EEECCCCCHHHHHHHHHHHHHHCCCCCHHHHE-E--EEEEEE----HHHHH-CC-
Q ss_conf 222178999999998622677874-89667641166899999999854898834520-1--445540----46753-06-
Q gi|254780163|r 205 ILVGRHEEINRTIQILCRRSKNNP-LYVGDPGVGKTAIAEGFAKQIVDGMVPDILLG-A--RIFSLD----MGNLI-AG- 274 (798)
Q Consensus 205 PVIGRd~EI~riiqIL~RR~KNn~-~lvG~~gvGktaive~la~~i~~~~vp~~l~~-~--~i~~ld----~~~l~-ag- 274 (798)
T Consensus 18 ~liGqe~~~~~L~~a~~~grl~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~~~p~~r~i~~~~ 97 (363)
T PRK07471 18 ALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDPDHPVARRIAAGA 97 (363)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHCCC
T ss_conf 31681999999999998599764587679998188999999999985799977777678705312587772899995269
Q ss_pred ---------------CCCCCHH-HHHHHHHHHHHC----CCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--C
Q ss_conf ---------------3431237-899999998720----38983999736166301554443447778888766302--6
Q gi|254780163|r 275 ---------------TRYRGDF-EERIKKIVKEIE----SYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSS--G 332 (798)
Q Consensus 275 ---------------~~~rg~f-e~r~~~~~~~~~----~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~r--g 332 (798)
T Consensus 98 hpdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~m---------n~~aaNALLK~LEEPP~ 168 (363)
T PRK07471 98 HGGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEM---------NANAANALLKVLEEPPA 168 (363)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHH---------CHHHHHHHHHHHCCCCC
T ss_conf 998466762001133321244539999999999724852489669998687873---------88999999997215898
Q ss_pred CEEEEEECC-HHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 603887304-8999998520111432001443068786899999986127665410351211178999998654201555
Q gi|254780163|r 333 AVRCIGSTT-YSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRK 411 (798)
Q Consensus 333 ~~~~IgatT-~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~ 411 (798)
T Consensus 169 ~t~fiLit~~~~~l------lpTI~SRCq~~~~~~l~~~~~~~~L~-------~~~~~~~~~~~~~~la~~a~G------ 229 (363)
T PRK07471 169 RSLLLLVSHAPARL------LPTIRSRCRKLRLRPLAPEDVIAALA-------EAGGPALDDAELAALAALAEG------ 229 (363)
T ss_pred CEEEEEEECCHHHC------HHHHHHHCCCCCCCCCCHHHHHHHHH-------HHCCCCCCHHHHHHHHHHCCC------
T ss_conf 83899863997777------79999735242589959999999999-------843899998999999997589------
Q ss_pred CHHHHHHHHHHH
Q ss_conf 646798899865
Q gi|254780163|r 412 LPDKAIDVIDEA 423 (798)
Q Consensus 412 lPdkAidllDea 423 (798)
T Consensus 230 s~~~Al~l~~~~ 241 (363)
T PRK07471 230 SVGRALRLAGGD 241 (363)
T ss_pred CHHHHHHHHCCC
T ss_conf 999999874798