HHsearch alignment for GI: 254780163 and conserved domain: PRK07993
>PRK07993 DNA polymerase III subunit delta'; Validated.
Probab=97.46 E-value=0.00043 Score=48.56 Aligned_cols=181 Identities=16% Similarity=0.207 Sum_probs=103.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHH-----
Q ss_conf 530356544258877548611222178999999998622677874896676411668999999998548988345-----
Q gi|254780163|r 184 FPALSAYCVDLTEKVKKGKVDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDIL----- 258 (798)
Q Consensus 184 ~~~LdkFg~DLTe~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l----- 258 (798)
T Consensus 4 YPWl~~~~~~l~~~~~~~rl~---------------------HA~L~~G~~G~Gk~~la~~~a~~llC~~-~~~~~~Cg~ 61 (334)
T PRK07993 4 YPWLRPDYEKLVGSYQAGRGH---------------------HALLIQALPGMGDDALIYALSRYLLCQQ-PQGHKSCGH 61 (334)
T ss_pred CCCCHHHHHHHHHHHHCCCCC---------------------EEEEEECCCCCCHHHHHHHHHHHHCCCC-CCCCCCCCC
T ss_conf 888789999999999859810---------------------4675479999889999999999981899-999999999
Q ss_pred -H-----------EEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHC----CCCCEEEEECCHHHHHCCCCCCCCCCCHH
Q ss_conf -2-----------0144554046753063431237899999998720----38983999736166301554443447778
Q gi|254780163|r 259 -L-----------GARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIE----SYANAILYIDEIHTLVGAGSASGISVDAS 322 (798)
Q Consensus 259 -~-----------~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~----~~~~~ilfideih~ligag~~~g~~~d~a 322 (798)
T Consensus 62 C~~C~l~~~~~HPD~~~i~pe~----~~~~I~---IdqIR~l~~~~~~~~~~g~~kV~iI~~Ae~m---------n~~Aa 125 (334)
T PRK07993 62 CRGCQLMQAGTHPDYYTLTPEK----GKSSLG---VDAVREVTEKLYEHARLGGAKVVWLPDAALL---------TDAAA 125 (334)
T ss_pred CHHHHHHHCCCCCCEEEECCCC----CCCCCC---HHHHHHHHHHHHHCCCCCCCEEEEECCHHHH---------CHHHH
T ss_conf 9789998668999847753422----345599---9999999999843665699479997667775---------99999
Q ss_pred HHHHHHHCC--CCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHH
Q ss_conf 888766302--660388730489999985201114320014430687868999999861276654103512111789999
Q gi|254780163|r 323 NLLKPALSS--GAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAV 400 (798)
Q Consensus 323 n~lkP~L~r--g~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av 400 (798)
T Consensus 126 NaLLKtLEEPp~~t~~iL~t~--~~~~---lLpTI~SRCq~~~~~~~~~~~~~~wL~~~---------~~~~~~~~~~al 191 (334)
T PRK07993 126 NALLKTLEEPPEKTWFFLACR--EPAR---LLATLRSRCRLHYLAPPPEQYALTWLSRE---------VTMSQEALLAAL 191 (334)
T ss_pred HHHHHHHCCCCCCEEEEEECC--CHHH---CCCHHHHHCCCCCCCCCCHHHHHHHHHHH---------CCCCHHHHHHHH
T ss_conf 999986127998849998669--8565---72388752304158997999999999873---------689889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 9865420155564679889986
Q gi|254780163|r 401 QLSVRHFTSRKLPDKAIDVIDE 422 (798)
Q Consensus 401 ~ls~ryi~~r~lPdkAidllDe 422 (798)
T Consensus 192 ~la~G------spl~A~~l~~~ 207 (334)
T PRK07993 192 RLSAG------APGAALALLQP 207 (334)
T ss_pred HHCCC------CHHHHHHHHCC
T ss_conf 98499------89999998256