HHsearch alignment for GI: 254780163 and conserved domain: PRK08058
>PRK08058 DNA polymerase III subunit delta'; Validated.
Probab=97.53 E-value=0.005 Score=40.90 Aligned_cols=180 Identities=17% Similarity=0.237 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHH-HHHCCCCCCE-EEECCCCCHHHHHHHHHHHHHHCCCCCHH--------------HHEEEEEEEE
Q ss_conf 122217899999999-8622677874-89667641166899999999854898834--------------5201445540
Q gi|254780163|r 204 DILVGRHEEINRTIQ-ILCRRSKNNP-LYVGDPGVGKTAIAEGFAKQIVDGMVPDI--------------LLGARIFSLD 267 (798)
Q Consensus 204 DPVIGRd~EI~riiq-IL~RR~KNn~-~lvG~~gvGktaive~la~~i~~~~vp~~--------------l~~~~i~~ld 267 (798)
T Consensus 5 ~~~~~~Q~~i~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~ 84 (329)
T PRK08058 5 EQLTALQPIVVKMLQNSIAKNRLAHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIESGNHPDVHLVA 84 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEC
T ss_conf 88883189999999999985996615655789998899999999999739999999988788899998769999767745
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHCC----CCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCC--CCEEEEEECC
Q ss_conf 467530634312378999999987203----8983999736166301554443447778888766302--6603887304
Q gi|254780163|r 268 MGNLIAGTRYRGDFEERIKKIVKEIES----YANAILYIDEIHTLVGAGSASGISVDASNLLKPALSS--GAVRCIGSTT 341 (798)
Q Consensus 268 ~~~l~ag~~~rg~fe~r~~~~~~~~~~----~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~r--g~~~~IgatT 341 (798)
T Consensus 85 p----~~~~i~---idqiR~L~~~~~~~p~~g~~KV~II~~Ae~m---------~~~AaNALLKtLEEPp~~t~fIL~t~ 148 (329)
T PRK08058 85 P----DGQSIK---KDQIRYLKEEFSKSGVESNKKVYIIEHADKM---------TASAANSLLKFLEEPSGDTTAILLTE 148 (329)
T ss_pred C----CCCCCC---HHHHHHHHHHHCCCCCCCCCEEEEEECHHHH---------CHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 6----614077---9999999999643875788679997347762---------99999999998646897867998729
Q ss_pred HHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 89999985201114320014430687868999999861276654103512111789999986542015556467988998
Q gi|254780163|r 342 YSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTSRKLPDKAIDVID 421 (798)
Q Consensus 342 ~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~r~lPdkAidllD 421 (798)
T Consensus 149 ~~--~~lL---pTI~SRCq~i~f~~~~~~~i~~~L~~--------~~i--~~~~a~l~a~~~-----g--s~~~A~~l~~ 206 (329)
T PRK08058 149 NK--HQIL---PTILSRCQVVEFRPLPPESLIQRLQE--------EGI--SESLATLLAQLT-----N--SVEEALALSE 206 (329)
T ss_pred CH--HHHH---HHHHHCCEEEECCCCCHHHHHHHHHH--------CCC--CHHHHHHHHHHC-----C--CHHHHHHHHC
T ss_conf 96--6643---68863142565889999999999998--------799--989999999878-----9--9999998842