HHsearch alignment for GI: 254780163 and conserved domain: PRK08084
>PRK08084 DNA replication initiation factor; Provisional.
Probab=98.29 E-value=0.00014 Score=52.18 Aligned_cols=184 Identities=17% Similarity=0.275 Sum_probs=106.1
Q ss_pred CHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHH---HCCCCEEEEEHHHHHCCCCC
Q ss_conf 002466534589999999998775204456578740688614320038899999873---04773377206886124653
Q gi|254780163|r 473 KNLGTVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAF---ALGVQLLRFDMSEYMERHAV 549 (798)
Q Consensus 473 ~~l~~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~---~~~~~lir~dmsey~e~~~v 549 (798)
T Consensus 19 ~tfdnFi~g~n~~~---~~al~~~~~--~~~~~---~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~~~~~--- 87 (235)
T PRK08084 19 ETFASFYPGDNDSL---LAALQNVLR--QEHSG---YIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDKRAWF--- 87 (235)
T ss_pred CCHHCCCCCCCHHH---HHHHHHHHH--CCCCC---EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHH---
T ss_conf 66302344886999---999999985--78987---69998999988899999999999707985799877986651---
Q ss_pred CHHCCCCCHHCCCCCCCCCCHHHHHCCCEEEEECCHHHC--CH----HHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEE
Q ss_conf 011047800025644431003555158517774044550--28----999999998777502177997761254299994
Q gi|254780163|r 550 SRLIGAPPGYVGFGQGGILADSVDQNPYSVVLLDEIEKS--HP----DVLNILLQIMDYGILTDQSGKKISFRNVILIMT 623 (798)
Q Consensus 550 s~LiGappGYvG~~egg~Lte~vr~~P~sVvl~DEiEKA--h~----~v~~~llqild~G~ltd~~Gr~vdf~n~iii~T 623 (798)
T Consensus 88 ------~~~---------~l~~l--~~~dll~iDDi~~i~g~~~~ee~lF~l~N~~~~~g-------------~~~ll~t 137 (235)
T PRK08084 88 ------VPE---------VLEGM--EQLSLVCIDNIECIAGDELWEMAIFDLYNRILESG-------------KTRLLIT 137 (235)
T ss_pred ------HHH---------HHHHH--HHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHC-------------CCEEEEE
T ss_conf ------799---------99876--41898998274554699789999999999999848-------------9669996
Q ss_pred CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCC--CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 2421455330368988211148899999872887881776--82896288999999999999999999999866988999
Q gi|254780163|r 624 TNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRL--DSIIPFFPLSSDIIRQVVHKFIMKLELQLQEKGISFHF 701 (798)
Q Consensus 624 sN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRi--d~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~ 701 (798)
T Consensus 138 s~~~P~~l---------------------~~~l~DL~SRl~~g~~~~i~~~dde~~~~iL~~~-------a~~rgl~--l 187 (235)
T PRK08084 138 GDRPPRQL---------------------NLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLR-------ARLRGFE--L 187 (235)
T ss_pred CCCCHHHC---------------------CCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHH-------HHHCCCC--C
T ss_conf 79882430---------------------2312889999956972785599989999999999-------9973999--9
Q ss_pred CHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 88999999971898101532679999986
Q gi|254780163|r 702 SEEVINWLVSHGYDVKMGARPLERIIKEH 730 (798)
Q Consensus 702 ~~~~~~~l~~~~~~~~~GAR~l~r~i~~~ 730 (798)
T Consensus 188 ~~~V~~yl~~~~~R-~~--~~L~~~l~~L 213 (235)
T PRK08084 188 PEDVGRFLLKRLDR-EM--RTLFMTLDQL 213 (235)
T ss_pred CHHHHHHHHHHCCC-CH--HHHHHHHHHH
T ss_conf 98999999986158-89--9999999999