HHsearch alignment for GI: 254780163 and conserved domain: PRK08181
>PRK08181 transposase; Validated.
Probab=97.89 E-value=0.00011 Score=52.86 Aligned_cols=100 Identities=16% Similarity=0.343 Sum_probs=70.3
Q ss_pred EEEEECCCCHHHHHHHHHHHH---HCCCCEEEEEHHHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHH-CCCEEEEECC
Q ss_conf 688614320038899999873---047733772068861246530110478000256444310035551-5851777404
Q gi|254780163|r 509 CYVFSGPTGVGKTEISKQLAF---ALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQ-NPYSVVLLDE 584 (798)
Q Consensus 509 ~flf~GptGvGKTelak~la~---~~~~~lir~dmsey~e~~~vs~LiGappGYvG~~egg~Lte~vr~-~P~sVvl~DE 584 (798)
T Consensus 108 Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~~~L~~a~~------------~~~~~~~~~~l~~~dLLIiDe 175 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARR------------ELQLESAIAKLDKFDLLILDD 175 (269)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHH------------CCCHHHHHHHHHCCCEEEEHH
T ss_conf 08998999987889999999999987993999789999999999775------------583999999974446012201
Q ss_pred HH--HCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEEECCCCHHHH
Q ss_conf 45--502899999999877750217799776125429999424214553
Q gi|254780163|r 585 IE--KSHPDVLNILLQIMDYGILTDQSGKKISFRNVILIMTTNAGALEM 631 (798)
Q Consensus 585 iE--KAh~~v~~~llqild~G~ltd~~Gr~vdf~n~iii~TsN~G~~~~ 631 (798)
T Consensus 176 ~G~~~~~~~~~~~lf~lI~~Ry-----e~------~S~IITSn~~~~~W 213 (269)
T PRK08181 176 LAYVTKDQAETSVLFELISARY-----ER------RSILITANQPFGEW 213 (269)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH-----CC------CCEEEECCCCHHHH
T ss_conf 0566799899999999999985-----78------88899889997788