HHsearch alignment for GI: 254780163 and conserved domain: PRK08769
>PRK08769 DNA polymerase III subunit delta'; Validated.
Probab=98.18 E-value=0.00039 Score=48.89 Aligned_cols=120 Identities=19% Similarity=0.281 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEEHHHHHCCCCCCHHC--CCCCH
Q ss_conf 58999999999877520445657874068861432003889999987304-7733772068861246530110--47800
Q gi|254780163|r 482 QEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL-GVQLLRFDMSEYMERHAVSRLI--GAPPG 558 (798)
Q Consensus 482 Q~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~-~~~lir~dmsey~e~~~vs~Li--GappG 558 (798)
T Consensus 9 q~~~~~~L~~~i~~~rl-------~-HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~---~~---~~~~~~~~~i~~g~HPD 74 (319)
T PRK08769 9 QQRAFDQTVAALDAGRL-------G-HGLLICGPEGLGKRAVALALAEHVLASGP---DP---ALAQRTRQLIAAGTHPD 74 (319)
T ss_pred CHHHHHHHHHHHHCCCC-------C-CEEEEECCCCCCHHHHHHHHHHHHHCCCC---CC---CCCCHHHHHHHCCCCCC
T ss_conf 68999999999976994-------2-06875899987899999999999837997---97---65433889996689989
Q ss_pred HCCC----CCC-------------CCCCHHHHHCC----CEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECCCC
Q ss_conf 0256----444-------------31003555158----51777404455028999999998777502177997761254
Q gi|254780163|r 559 YVGF----GQG-------------GILADSVDQNP----YSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISFRN 617 (798)
Q Consensus 559 YvG~----~eg-------------g~Lte~vr~~P----~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf~n 617 (798)
T Consensus 75 ~~~i~~~~~~~~~k~k~~I~IdqiR~l~~~~~~~p~~g~~KV~IId~Ad~mn~~AaNalLK~LEEPp-----------~~ 143 (319)
T PRK08769 75 LQLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRSACNALLKTLEEPS-----------PG 143 (319)
T ss_pred EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCCC-----------CC
T ss_conf 6877534444543112348699999999996137202795699980667528999999999822799-----------88
Q ss_pred EEEEEECCC
Q ss_conf 299994242
Q gi|254780163|r 618 VILIMTTNA 626 (798)
Q Consensus 618 ~iii~TsN~ 626 (798)
T Consensus 144 ~~~iL~~~~ 152 (319)
T PRK08769 144 RYLWLISAQ 152 (319)
T ss_pred EEEEEEECC
T ss_conf 489998699