HHsearch alignment for GI: 254780163 and conserved domain: PRK09862
>PRK09862 putative ATP-dependent protease; Provisional.
Probab=97.89 E-value=0.00025 Score=50.32 Aligned_cols=145 Identities=22% Similarity=0.391 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEE-------------------
Q ss_conf 1122217899999999862267787489667641166899999999854898834520144-------------------
Q gi|254780163|r 203 VDILVGRHEEINRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARI------------------- 263 (798)
Q Consensus 203 LDPVIGRd~EI~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i------------------- 263 (798)
T Consensus 190 ~~dv~Gq~~-akraleIAAA-GgHnlLl~GpPG~GKTMlA~rlp~ILPpLt~~e~lEv~~I~Svag~~~~~~~~~~rPfR 267 (506)
T PRK09862 190 LSDVVGQEQ-GKRGLEITAA-GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFR 267 (506)
T ss_pred HHHHCCCHH-HHHHHHHHHC-CCCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf 565369799-9999999744-68865987699945989997751238998989999999999871898777754668503
Q ss_pred ---EEEEHHHHHCCCC-CCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEE---
Q ss_conf ---5540467530634-312378999999987203898399973616630155444344777888876630266038---
Q gi|254780163|r 264 ---FSLDMGNLIAGTR-YRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSGAVRC--- 336 (798)
Q Consensus 264 ---~~ld~~~l~ag~~-~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg~~~~--- 336 (798)
T Consensus 268 ~PHHs~S~~aliGGG~~~~----------PGEISLAH~GVLFLDElpEF---------~r~vLe~LRqPLE~g~I~IsRa 328 (506)
T PRK09862 268 SPHHSASLTAMVGGGAIPG----------PGEISLAHNGVLFLDELPEF---------ERRTLDALREPIESGQIHLSRT 328 (506)
T ss_pred CCCCCCCHHHHHCCCCCCC----------CCCEEECCCCEEEECCHHCC---------CHHHHHHHHHHHCCCEEEEEEC
T ss_conf 7887654766637999999----------97222135757884550006---------8889998776224775999966
Q ss_pred ------------EE---------------ECCHHHHHHHHHC-CHHHHHHCEE-EEECCCC
Q ss_conf ------------87---------------3048999998520-1114320014-4306878
Q gi|254780163|r 337 ------------IG---------------STTYSEYRQFFEK-DKALVRRFQK-IDVSEPS 368 (798)
Q Consensus 337 ------------Ig---------------atT~~ey~~~~e~-d~al~rrF~~-i~v~ep~ 368 (798)
T Consensus 329 ~~~~~~PA~F~LVaAmNPCPCG~~~~~~~~Ct~~~~~rY~~rlSGPllDRiDl~v~v~~~~ 389 (506)
T PRK09862 329 RAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPP 389 (506)
T ss_pred CCEEEECCHHHHEHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHCEEEEEECCCCC
T ss_conf 8679861533111103788888899997778989999998656622130364799816899