HHsearch alignment for GI: 254780163 and conserved domain: PRK10365
>PRK10365 transcriptional regulatory protein ZraR; Provisional.
Probab=97.61 E-value=0.00021 Score=50.79 Aligned_cols=176 Identities=19% Similarity=0.256 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC--------C
Q ss_conf 222178999999998622--677874896676411668999999998548988345201445540467530--------6
Q gi|254780163|r 205 ILVGRHEEINRTIQILCR--RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA--------G 274 (798)
Q Consensus 205 PVIGRd~EI~riiqIL~R--R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a--------g 274 (798)
T Consensus 140 ~liG~S~am~~v~~~i~~~A~s~~pVLI~GE~GTGK~~~Ar~IH~~S~-------r~~~pfv~vnC~~l~~~l~eseLFG 212 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSA-------RSEKPLVTLNCAALNESLLESELFG 212 (441)
T ss_pred CCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCC-------CCCCCCEEEECCCCCHHHHHHHHCC
T ss_conf 866689999999999999848899489989998109999999996578-------7789807987898984555898617
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCC-------------CEEEEEECC
Q ss_conf 3431237899999998720389839997361663015544434477788887663026-------------603887304
Q gi|254780163|r 275 TRYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSG-------------AVRCIGSTT 341 (798)
Q Consensus 275 ~~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg-------------~~~~IgatT 341 (798)
T Consensus 213 ~-~~gaftga~~~~~g~~~~A~gGTLfLdeI~~l---------~~~~Q~kLl~~l~~~~~~~~g~~~~~~~d~RiIaat~ 282 (441)
T PRK10365 213 H-EKGAFTGADKRREGRFVEADGGTLFLDEIGDI---------SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATH 282 (441)
T ss_pred C-CCCCCCCCCCCCCCCEEECCCCEECCCCCCCC---------CHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCC
T ss_conf 7-55687896534689877889982550231529---------9999999998777521000588734413637998378
Q ss_pred HHHHHHHHHCC---HHHHHHCEEEEECCCCHHHHH----HHHHHHHHHHHHHCCC---EECCHHHHH
Q ss_conf 89999985201---114320014430687868999----9998612766541035---121117899
Q gi|254780163|r 342 YSEYRQFFEKD---KALVRRFQKIDVSEPSIEDAI----EIVKGIKPYFEEHHQL---RYSKEAIRA 398 (798)
Q Consensus 342 ~~ey~~~~e~d---~al~rrF~~i~v~ep~~~~~~----~iL~~~~~~ye~~h~v---~~~~~al~~ 398 (798)
T Consensus 283 ~~l-~~~v~~g~Fr~dLy~rL~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~ 348 (441)
T PRK10365 283 RDL-AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDL 348 (441)
T ss_pred CCH-HHHHHCCCCHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 899-999881982589998860111378260006200999999999999998499988889999999