HHsearch alignment for GI: 254780163 and conserved domain: PRK10787

>PRK10787 DNA-binding ATP-dependent protease La; Provisional.
Probab=98.74  E-value=1.2e-06  Score=66.83  Aligned_cols=178  Identities=24%  Similarity=0.418  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCC-CC-----EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHH-----HCC
Q ss_conf             22178999999998622677-87-----48966764116689999999985489883452014455404675-----306
Q gi|254780163|r  206 LVGRHEEINRTIQILCRRSK-NN-----PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNL-----IAG  274 (798)
Q Consensus       206 VIGRd~EI~riiqIL~RR~K-Nn-----~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l-----~ag  274 (798)
T Consensus       324 HyGL~~vKeRile~lAv~~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al----------~r~f~rislGGv~DeaeirG  393 (784)
T PRK10787        324 HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT----------GRKYVRMALGGVRDEAEIRG  393 (784)
T ss_pred             HCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEECCCCCCHHHHCC
T ss_conf             30657799999999999986246778779964699877246999999985----------89869980688788888256


Q ss_pred             C--CCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC-----------------CCCEE
Q ss_conf             3--4312378999999987203898399973616630155444344777888876630-----------------26603
Q gi|254780163|r  275 T--RYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALS-----------------SGAVR  335 (798)
Q Consensus       275 ~--~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~-----------------rg~~~  335 (798)
T Consensus       394 HrrTYvgampGrii~~l~~a~~-~nPv~llDEiDK~-~~~-~~G---dp~salLEvLDpeQN~~F~Dhyl~~~~DlS~v~  467 (784)
T PRK10787        394 HRRTYIGSMPGKLIQKMAKVGV-KNPLFLLDEIDKM-SSD-MRG---DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM  467 (784)
T ss_pred             CCCCCCCCCCHHHHHHHHHHCC-CCCEEEEHHHHHH-CCC-CCC---CHHHHHHHHCCHHHCCCCCCCEEECCCCHHHEE
T ss_conf             4334344368389999997489-8856650035552-245-589---988999984597655640003220464522258


Q ss_pred             EEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHH-HHHHHHHHC-----CCEECCHHHHHHHHHHHH
Q ss_conf             8873048999998520111432001443068786899999986-127665410-----351211178999998654
Q gi|254780163|r  336 CIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKG-IKPYFEEHH-----QLRYSKEAIRAAVQLSVR  405 (798)
Q Consensus       336 ~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~-~~~~ye~~h-----~v~~~~~al~~av~ls~r  405 (798)
T Consensus       468 Fi~--TaN~----~~ip~pLlDRmE~i~~~gYt~~eK~~Ia~~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~~ytr  537 (784)
T PRK10787        468 FVA--T