HHsearch alignment for GI: 254780163 and conserved domain: PRK10787
>PRK10787 DNA-binding ATP-dependent protease La; Provisional.
Probab=98.74 E-value=1.2e-06 Score=66.83 Aligned_cols=178 Identities=24% Similarity=0.418 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHCCCC-CC-----EEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHH-----HCC
Q ss_conf 22178999999998622677-87-----48966764116689999999985489883452014455404675-----306
Q gi|254780163|r 206 LVGRHEEINRTIQILCRRSK-NN-----PLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNL-----IAG 274 (798)
Q Consensus 206 VIGRd~EI~riiqIL~RR~K-Nn-----~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l-----~ag 274 (798)
T Consensus 324 HyGL~~vKeRile~lAv~~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al----------~r~f~rislGGv~DeaeirG 393 (784)
T PRK10787 324 HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT----------GRKYVRMALGGVRDEAEIRG 393 (784)
T ss_pred HCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEECCCCCCHHHHCC
T ss_conf 30657799999999999986246778779964699877246999999985----------89869980688788888256
Q ss_pred C--CCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHC-----------------CCCEE
Q ss_conf 3--4312378999999987203898399973616630155444344777888876630-----------------26603
Q gi|254780163|r 275 T--RYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALS-----------------SGAVR 335 (798)
Q Consensus 275 ~--~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~-----------------rg~~~ 335 (798)
T Consensus 394 HrrTYvgampGrii~~l~~a~~-~nPv~llDEiDK~-~~~-~~G---dp~salLEvLDpeQN~~F~Dhyl~~~~DlS~v~ 467 (784)
T PRK10787 394 HRRTYIGSMPGKLIQKMAKVGV-KNPLFLLDEIDKM-SSD-MRG---DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred CCCCCCCCCCHHHHHHHHHHCC-CCCEEEEHHHHHH-CCC-CCC---CHHHHHHHHCCHHHCCCCCCCEEECCCCHHHEE
T ss_conf 4334344368389999997489-8856650035552-245-589---988999984597655640003220464522258
Q ss_pred EEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHH-HHHHHHHHC-----CCEECCHHHHHHHHHHHH
Q ss_conf 8873048999998520111432001443068786899999986-127665410-----351211178999998654
Q gi|254780163|r 336 CIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKG-IKPYFEEHH-----QLRYSKEAIRAAVQLSVR 405 (798)
Q Consensus 336 ~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~-~~~~ye~~h-----~v~~~~~al~~av~ls~r 405 (798)
T Consensus 468 Fi~--TaN~----~~ip~pLlDRmE~i~~~gYt~~eK~~Ia~~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~~ytr 537 (784)
T PRK10787 468 FVA--TSNS----MNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTR 537 (784)
T ss_pred EEE--ECCC----CCCCHHHHHHEEEEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 997--3276----778767763121554116767889999997453999998289965674399999998753365