HHsearch alignment for GI: 254780163 and conserved domain: PRK11331
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional.
Probab=98.18 E-value=1.4e-05 Score=59.25 Aligned_cols=147 Identities=24% Similarity=0.288 Sum_probs=90.7
Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEE-EEEHHHHHCCCCC-CCHHH---HHHHH
Q ss_conf 9999998622677874896676411668999999998548988345201445-5404675306343-12378---99999
Q gi|254780163|r 213 INRTIQILCRRSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIF-SLDMGNLIAGTRY-RGDFE---ERIKK 287 (798)
Q Consensus 213 I~riiqIL~RR~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~-~ld~~~l~ag~~~-rg~fe---~r~~~ 287 (798)
T Consensus 184 i~~~--~~sLktKknvIL~G~pGtGKT~lAk~lA~~l~g~~~~~rv~~VqfhpsysYEDfi~Gyrp~~~gf~~~~G~f~~ 261 (459)
T PRK11331 184 IETI--LKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYN 261 (459)
T ss_pred HHHH--HHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCCCCCCCCCCEECCCHHHH
T ss_conf 9999--99854588279658999887899999999970788778468998358866178764605688861326836999
Q ss_pred HHHHHCCCC--CEEEEECCHH------------HHHCCCCCCCCCCCHHHHHHHHHC--------CCCEEEEEECCHHHH
Q ss_conf 998720389--8399973616------------630155444344777888876630--------266038873048999
Q gi|254780163|r 288 IVKEIESYA--NAILYIDEIH------------TLVGAGSASGISVDASNLLKPALS--------SGAVRCIGSTTYSEY 345 (798)
Q Consensus 288 ~~~~~~~~~--~~ilfideih------------~ligag~~~g~~~d~an~lkP~L~--------rg~~~~IgatT~~ey 345 (798)
T Consensus 262 ~~~~A~~~p~~~y~~iideinr~~~~~~fgel~~liE~dkR~~-~~---~~~l~ys~~~~~~f~vP~Nl~iigtmNtad- 336 (459)
T PRK11331 262 FCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGE-NW---SVPLTYSENDEERFYVPENVYIIGLMNTAD- 336 (459)
T ss_pred HHHHHHHCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHCCCCC-CC---EEEEECCCCCCCEECCCCCEEEEEECCCCC-
T ss_conf 9999984989876999843203388999999999964125676-52---256300368885334688659998503341-
Q ss_pred HHHHHCCHHHHHHCEEEEECC
Q ss_conf 998520111432001443068
Q gi|254780163|r 346 RQFFEKDKALVRRFQKIDVSE 366 (798)
Q Consensus 346 ~~~~e~d~al~rrF~~i~v~e 366 (798)
T Consensus 337 rs~~~~d~alrRrf~f~~~~p 357 (459)
T PRK11331 337 RSLAVVDYALRRRFSFIDIEP 357 (459)
T ss_pred HHHHHHHHHHHHHHCCEECCC
T ss_conf 068878999986502121589