HHsearch alignment for GI: 254780163 and conserved domain: PRK11608
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional.
Probab=98.21 E-value=2.2e-05 Score=57.84 Aligned_cols=145 Identities=21% Similarity=0.295 Sum_probs=87.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC-----
Q ss_conf 8611222178999999998622--677874896676411668999999998548988345201445540467530-----
Q gi|254780163|r 201 GKVDILVGRHEEINRTIQILCR--RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA----- 273 (798)
Q Consensus 201 GKLDPVIGRd~EI~riiqIL~R--R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a----- 273 (798)
T Consensus 3 ~~~~~liG~S~~m~~v~~~~~~~A~~~~pVLI~GE~GtGK~~~Ar~IH~~S~r-------~~~pfi~v~C~~l~~~~~e~ 75 (325)
T PRK11608 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR-------WQGPFISLNCAALNENLLDS 75 (325)
T ss_pred CCCCCCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCC-------CCCCCEEEECCCCCHHHHHH
T ss_conf 77899858999999999999999688999898898983799999999965886-------79997788779899778899
Q ss_pred ---C--------C--CCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCC--------
Q ss_conf ---6--------3--431237899999998720389839997361663015544434477788887663026--------
Q gi|254780163|r 274 ---G--------T--RYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSG-------- 332 (798)
Q Consensus 274 ---g--------~--~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg-------- 332 (798)
T Consensus 76 ~LFG~~~g~~~~~~~~~~g~le-----------~a~gGTL~L~eI~~l---------~~~~Q~~Ll~~l~~~~~~r~g~~ 135 (325)
T PRK11608 76 ELFGHEAGAFTGAQKRHPGRFE-----------RADGGTLFLDELATA---------PMLVQEKLLRVIEYGELERVGGS 135 (325)
T ss_pred HHCCCCCCCCCCCCCCCCCHHH-----------CCCCCEEEEECHHHC---------CHHHHHHHHHHHHCCCEEECCCC
T ss_conf 8727755676775324687343-----------568986997374547---------99999999999864908857998
Q ss_pred -----CEEEEEECCHHHHHHHHHCCH---HHHHHCEEEEECCCCHHHHH
Q ss_conf -----603887304899999852011---14320014430687868999
Q gi|254780163|r 333 -----AVRCIGSTTYSEYRQFFEKDK---ALVRRFQKIDVSEPSIEDAI 373 (798)
Q Consensus 333 -----~~~~IgatT~~ey~~~~e~d~---al~rrF~~i~v~ep~~~~~~ 373 (798)
T Consensus 136 ~~~~~~~RiIa~t~~~-l~~lv~~g~fr~dLy~rL~~~~I~lPpLReR~ 183 (325)
T PRK11608 136 QPLQVNVRLVCATNAD-LPAMVNEGTFRADLLDRLAFDVVQLPPLRERQ 183 (325)
T ss_pred CCCCCCEEEEECCCHH-HHHHHHHCCCHHHHHHHHHHHHCCCCCHHHCC
T ss_conf 7665646887133220-89999839567999856530111586845471