HHsearch alignment for GI: 254780163 and conserved domain: PRK11608

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional.
Probab=98.21  E-value=2.2e-05  Score=57.84  Aligned_cols=145  Identities=21%  Similarity=0.295  Sum_probs=87.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHC--CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEHHHHHC-----
Q ss_conf             8611222178999999998622--677874896676411668999999998548988345201445540467530-----
Q gi|254780163|r  201 GKVDILVGRHEEINRTIQILCR--RSKNNPLYVGDPGVGKTAIAEGFAKQIVDGMVPDILLGARIFSLDMGNLIA-----  273 (798)
Q Consensus       201 GKLDPVIGRd~EI~riiqIL~R--R~KNn~~lvG~~gvGktaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~a-----  273 (798)
T Consensus         3 ~~~~~liG~S~~m~~v~~~~~~~A~~~~pVLI~GE~GtGK~~~Ar~IH~~S~r-------~~~pfi~v~C~~l~~~~~e~   75 (325)
T PRK11608          3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR-------WQGPFISLNCAALNENLLDS   75 (325)
T ss_pred             CCCCCCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCC-------CCCCCEEEECCCCCHHHHHH
T ss_conf             77899858999999999999999688999898898983799999999965886-------79997788779899778899


Q ss_pred             ---C--------C--CCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCC--------
Q ss_conf             ---6--------3--431237899999998720389839997361663015544434477788887663026--------
Q gi|254780163|r  274 ---G--------T--RYRGDFEERIKKIVKEIESYANAILYIDEIHTLVGAGSASGISVDASNLLKPALSSG--------  332 (798)
Q Consensus       274 ---g--------~--~~rg~fe~r~~~~~~~~~~~~~~ilfideih~ligag~~~g~~~d~an~lkP~L~rg--------  332 (798)
T Consensus        76 ~LFG~~~g~~~~~~~~~~g~le-----------~a~gGTL~L~eI~~l---------~~~~Q~~Ll~~l~~~~~~r~g~~  135 (325)
T PRK11608         76 ELFGHEAGAFTGAQKRHPGRFE-----------RADGGTLFLDELATA---------PMLVQEKLLRVIEYGELERVGGS  135 (325)
T ss_pred             HHCCCCCCCCCCCCCCCCCHHH-----------CCCCCEEEEECHHHC---------CHHHHHHHHHHHHCCCEEECCCC
T ss_conf             8727755676775324687343-----------568986997374547---------99999999999864908857998


Q ss_pred             -----CEEEEEECCHHHHHHHHHCCH---HHHHHCEEEEECCCCHHHHH
Q ss_conf             -----603887304899999852011---14320014430687868999
Q gi|254780163|r  333 -----AVRCIGSTTYSEYRQFFEKDK---ALVRRFQKIDVSEPSIEDAI  373 (798)
Q Consensus       333 -----~~~~IgatT~~ey~~~~e~d~---al~rrF~~i~v~ep~~~~~~  373 (798)
T Consensus       136 ~~~~~~~RiIa~t~~~-l~~lv~~g~fr~dLy~rL~~~~I~lPpLReR~  183 (325)
T PRK11608        136 QPLQVNVRLVCATNAD-LPAMVNEGTFRADLLDRLAFDVVQLPPLRERQ  183 (325)
T ss_pred             CCCCCCEEEEECCCHH-HHHHHHHCCCHHHHHHHHHHHHCCCCCHHHCC
T ss_conf             7665646887133220-89999839567999856530111586845471