HHsearch alignment for GI: 254780163 and conserved domain: PRK11889

Probab=96.68  E-value=0.0035  Score=42.06  Aligned_cols=95  Identities=20%  Similarity=0.272  Sum_probs=52.6

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHH--HHC---CCCEEEEEH---HHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHH--
Q ss_conf             874068861432003889999987--304---773377206---8861246530110478000256444310035551--
Q gi|254780163|r  505 KPIGCYVFSGPTGVGKTEISKQLA--FAL---GVQLLRFDM---SEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQ--  574 (798)
Q Consensus       505 rP~g~flf~GptGvGKTelak~la--~~~---~~~lir~dm---sey~e~~~vs~LiGappGYvG~~egg~Lte~vr~--  574 (798)
T Consensus       239 ~~~q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRIGAVEQLKTYAeIMgVPV-~VV~d-p~eL~~AL~~lk  316 (436)
T PRK11889        239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-IAVRD-EAAMTRALTYFK  316 (436)
T ss_pred             HHCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCE-EEECC-HHHHHHHHHHHH
T ss_conf             4171799989999888999999999986169808999806634769999999999849943-99688-899999999876


Q ss_pred             --CCCEEEEECCHHHCCHHHHHH--HHHHHH
Q ss_conf             --585177740445502899999--999877
Q gi|254780163|r  575 --NPYSVVLLDEIEKSHPDVLNI--LLQIMD  601 (798)
Q Consensus       575 --~P~sVvl~DEiEKAh~~v~~~--llqild  601 (798)
T Consensus       317 dka~~DLILIDTAGRS~RD~~~I~EL~~~l~  347 (436)
T PRK11889        317 EEARVDYILIDTAGKNYRASETVEEMIETMG  347 (436)
T ss_pred             HCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             3368888999298988468999999999985