HHsearch alignment for GI: 254780163 and conserved domain: PRK12323
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional.
Probab=98.91 E-value=2.7e-08 Score=78.73 Aligned_cols=197 Identities=21% Similarity=0.263 Sum_probs=126.5
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCE-EEECCCCCHHHHHHHHHHHHHHCCC---------CCH----------
Q ss_conf 77548611222178999999998622677874-8966764116689999999985489---------883----------
Q gi|254780163|r 197 KVKKGKVDILVGRHEEINRTIQILCRRSKNNP-LYVGDPGVGKTAIAEGFAKQIVDGM---------VPD---------- 256 (798)
Q Consensus 197 ~AreGKLDPVIGRd~EI~riiqIL~RR~KNn~-~lvG~~gvGktaive~la~~i~~~~---------vp~---------- 256 (798)
T Consensus 9 k~RP~~F~~~vGQ~~v~~~l~na~~~~r~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~C~~i~ 88 (721)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRACTEID 88 (721)
T ss_pred HHCCCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 40798665532859999999999971997544750279988898999999999768998667898788787765468775
Q ss_pred HHHEEEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHCC---CCC-EEEEECCHHHHHCCCCCCCCCCCHHH-HHHHHHC-
Q ss_conf 45201445540467530634312378999999987203---898-39997361663015544434477788-8876630-
Q gi|254780163|r 257 ILLGARIFSLDMGNLIAGTRYRGDFEERIKKIVKEIES---YAN-AILYIDEIHTLVGAGSASGISVDASN-LLKPALS- 330 (798)
Q Consensus 257 ~l~~~~i~~ld~~~l~ag~~~rg~fe~r~~~~~~~~~~---~~~-~ilfideih~ligag~~~g~~~d~an-~lkP~L~- 330 (798)
T Consensus 89 ~g~~~d~~EiDaas------~~~v--~~~r~l~~~~~y~P~~~~~KvyiiDevhmls---------~~afnalLK-tlEe 150 (721)
T PRK12323 89 AGRFVDYIEMDAAS------NRGV--DEMAQLLDQAVYAPTAGRFKVYMIDEVHMLT---------NHAFNAMLK-TLEE 150 (721)
T ss_pred CCCCCCEEEEECCC------CCCH--HHHHHHHHHCCCCCCCCCEEEEEEECCCCCC---------HHHHHHHHH-HHCC
T ss_conf 68987647743676------7888--9999999854558876644699985400058---------999999998-4017
Q ss_pred -CCCEEEEEECCHHHHHHHHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHCCC
Q ss_conf -2660388730489999985201114320014430687868999999861276654103512111789999986542015
Q gi|254780163|r 331 -SGAVRCIGSTTYSEYRQFFEKDKALVRRFQKIDVSEPSIEDAIEIVKGIKPYFEEHHQLRYSKEAIRAAVQLSVRHFTS 409 (798)
Q Consensus 331 -rg~~~~IgatT~~ey~~~~e~d~al~rrF~~i~v~ep~~~~~~~iL~~~~~~ye~~h~v~~~~~al~~av~ls~ryi~~ 409 (798)
T Consensus 151 PP~hv~FilaTT~~--~Kip--~TilSR-c~~f~~~~~~~~~i~~~l~~i~----~~E~i~~~~~al~~ia~~a~Gs~RD 221 (721)
T PRK12323 151 PPPHVKFILATTDP--QKIP--VTVLSR-CLQFNLKQMPPGHIVSHLDAIL----GQEGIGHEGNALRLLAQAAHGSMRD 221 (721)
T ss_pred CCCCEEEEEECCCH--HHCC--HHHHHH-HHHCCCCCCCHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHCCCCHHH
T ss_conf 97553899943863--4485--889877-6542347899999999999999----9839977999999999975896476
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 55646798899865333
Q gi|254780163|r 410 RKLPDKAIDVIDEAGAS 426 (798)
Q Consensus 410 r~lPdkAidllDea~a~ 426 (798)
T Consensus 222 ------alslldQaia~ 232 (721)
T PRK12323 222 ------ALSLTDQAIAY 232 (721)
T ss_pred ------HHHHHHHHHHH
T ss_conf ------88899999986