HHsearch alignment for GI: 254780163 and conserved domain: PRK12402
>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=99.20 E-value=1.1e-09 Score=88.66 Aligned_cols=189 Identities=23% Similarity=0.325 Sum_probs=119.4
Q ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC-----CCCEEEEEHHHHHCCCCC--
Q ss_conf 6653458999999999877520445657874068861432003889999987304-----773377206886124653--
Q gi|254780163|r 477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL-----GVQLLRFDMSEYMERHAV-- 549 (798)
Q Consensus 477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~-----~~~lir~dmsey~e~~~v-- 549 (798)
T Consensus 15 ~dvvGq~~i~~~L~~~~~~-------~~~p--hlLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~~i 85 (337)
T PRK12402 15 EDILGQESVVDHLSALAAS-------GNLP--HLVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKKYL 85 (337)
T ss_pred HHHCCCHHHHHHHHHHHHC-------CCCC--EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEE
T ss_conf 9803979999999999977-------9987--698889298489999999999967997567833311653113564001
Q ss_pred ------CHHCCCCCHHCCCCCCCCCCHHH----HH----CCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECC
Q ss_conf ------01104780002564443100355----51----58517774044550289999999987775021779977612
Q gi|254780163|r 550 ------SRLIGAPPGYVGFGQGGILADSV----DQ----NPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISF 615 (798)
Q Consensus 550 ------s~LiGappGYvG~~egg~Lte~v----r~----~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf 615 (798)
T Consensus 86 ~~~~~~~~~~~~~~-~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~-----------~ 153 (337)
T PRK12402 86 VEDPRFAHFYDDPK-RKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERY-----------S 153 (337)
T ss_pred ECCCCHHHHHCCHH-HCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC-----------C
T ss_conf 01664234420153-32773789999999998614887788049997071317999999999887408-----------8
Q ss_pred CCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 54299994242145533036898821114889999987288788177682896288999999999999999999999866
Q gi|254780163|r 616 RNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEK 695 (798)
Q Consensus 616 ~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~ 695 (798)
T Consensus 154 ~~~~fIl~t~~~~~-------------------------ii~tI~SRC-~~i~F~~~s~~~i~~~L~~----I---~~~E 200 (337)
T PRK12402 154 ETCRFIFSTTQPSK-------------------------LIPPIRSRC-LPLFFRPVPDDEIRSVLES----I---AAAE 200 (337)
T ss_pred CCEEEEEECCCCCC-------------------------CCHHHHHHC-EEEECCCCCHHHHHHHHHH----H---HHHC
T ss_conf 76699872386444-------------------------752477624-4543589899999999999----9---9984
Q ss_pred CCEEEECHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 98899988999999971898101532679999
Q gi|254780163|r 696 GISFHFSEEVINWLVSHGYDVKMGARPLERII 727 (798)
Q Consensus 696 ~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i 727 (798)
T Consensus 201 ~--i~~~~~~l~~ia~~s~------GdlR~ai 224 (337)
T PRK12402 201 G--VEISDDGLDLIAYYAE------GDLRKAI 224 (337)
T ss_pred C--CCCCHHHHHHHHHHCC------CCHHHHH
T ss_conf 9--9989999999999869------9899999