HHsearch alignment for GI: 254780163 and conserved domain: PRK12402

>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=99.20  E-value=1.1e-09  Score=88.66  Aligned_cols=189  Identities=23%  Similarity=0.325  Sum_probs=119.4

Q ss_pred             HHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC-----CCCEEEEEHHHHHCCCCC--
Q ss_conf             6653458999999999877520445657874068861432003889999987304-----773377206886124653--
Q gi|254780163|r  477 TVVYGQEEAIKKLSSSIKIARAGLSDPNKPIGCYVFSGPTGVGKTEISKQLAFAL-----GVQLLRFDMSEYMERHAV--  549 (798)
Q Consensus       477 ~~v~GQ~~ai~~v~~~i~~~~~gl~~~~rP~g~flf~GptGvGKTelak~la~~~-----~~~lir~dmsey~e~~~v--  549 (798)
T Consensus        15 ~dvvGq~~i~~~L~~~~~~-------~~~p--hlLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~~i   85 (337)
T PRK12402         15 EDILGQESVVDHLSALAAS-------GNLP--HLVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKKYL   85 (337)
T ss_pred             HHHCCCHHHHHHHHHHHHC-------CCCC--EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEE
T ss_conf             9803979999999999977-------9987--698889298489999999999967997567833311653113564001


Q ss_pred             ------CHHCCCCCHHCCCCCCCCCCHHH----HH----CCCEEEEECCHHHCCHHHHHHHHHHHHHHHCCCCCCCEECC
Q ss_conf             ------01104780002564443100355----51----58517774044550289999999987775021779977612
Q gi|254780163|r  550 ------SRLIGAPPGYVGFGQGGILADSV----DQ----NPYSVVLLDEIEKSHPDVLNILLQIMDYGILTDQSGKKISF  615 (798)
Q Consensus       550 ------s~LiGappGYvG~~egg~Lte~v----r~----~P~sVvl~DEiEKAh~~v~~~llqild~G~ltd~~Gr~vdf  615 (798)
T Consensus        86 ~~~~~~~~~~~~~~-~~~~~~~d~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~-----------~  153 (337)
T PRK12402         86 VEDPRFAHFYDDPK-RKYKSVIDNFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERY-----------S  153 (337)
T ss_pred             ECCCCHHHHHCCHH-HCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC-----------C
T ss_conf             01664234420153-32773789999999998614887788049997071317999999999887408-----------8


Q ss_pred             CCEEEEEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             54299994242145533036898821114889999987288788177682896288999999999999999999999866
Q gi|254780163|r  616 RNVILIMTTNAGALEMSKARIGFGSSRNDDADKEALRNFLSPEFLNRLDSIIPFFPLSSDIIRQVVHKFIMKLELQLQEK  695 (798)
Q Consensus       616 ~n~iii~TsN~G~~~~~~~~~g~~~~~~~~~~~~~l~~~f~peflnRid~ii~F~~l~~~~~~~i~~~~l~~l~~~l~~~  695 (798)
T Consensus       154 ~~~~fIl~t~~~~~-------------------------ii~tI~SRC-~~i~F~~~s~~~i~~~L~~----I---~~~E  200 (337)
T PRK12402        154 ETCRFIFSTTQPSK-------------------------LIPPIRSRC-LPLFFRPVPDDEIRSVLES----I---AAAE  200 (337)
T ss_pred             CCEEEEEECCCCCC-------------------------CCHHHHHHC-EEEECCCCCHHHHHHHHHH----H---HHHC
T ss_conf             76699872386444-------------------------752477624-4543589899999999999----9---9984


Q ss_pred             CCEEEECHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf             98899988999999971898101532679999
Q gi|254780163|r  696 GISFHFSEEVINWLVSHGYDVKMGARPLERII  727 (798)
Q Consensus       696 ~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i  727 (798)
T Consensus       201 ~--i~~~~~~l~~ia~~s~------GdlR~ai  224 (337)
T PRK12402        201 G--VEISDDGLDLIAYYAE------GDLRKAI  224 (337)
T ss_pred             C--CCCCHHHHHHHHHHCC------CCHHHHH
T ss_conf             9--9989999999999869------9899999