HHsearch alignment for GI: 254780163 and conserved domain: PRK12724

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.84  E-value=9.3e-05  Score=53.35  Aligned_cols=87  Identities=23%  Similarity=0.309  Sum_probs=51.9

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHH------HHCCCCEEEEEH---HHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCC
Q ss_conf             74068861432003889999987------304773377206---886124653011047800025644431003555158
Q gi|254780163|r  506 PIGCYVFSGPTGVGKTEISKQLA------FALGVQLLRFDM---SEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNP  576 (798)
Q Consensus       506 P~g~flf~GptGvGKTelak~la------~~~~~~lir~dm---sey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P  576 (798)
T Consensus       222 ~~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv-~vv~~~-~el~~al~~~~  299 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPF-YPVKDI-KKFKETLARDG  299 (432)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCE-EEEECH-HHHHHHHHHCC
T ss_conf             7629999899998889999999999999749927999526653779999999999859945-995189-99999998569


Q ss_pred             CEEEEECCHHHCCHHHHH
Q ss_conf             517774044550289999
Q gi|254780163|r  577 YSVVLLDEIEKSHPDVLN  594 (798)
Q Consensus       577 ~sVvl~DEiEKAh~~v~~  594 (798)
T Consensus       300 ~DlILIDTAGrS~rd~~~  317 (432)
T PRK12724        300 SELILIDTAGYSHRNLEQ  317 (432)
T ss_pred             CCEEEEECCCCCCCCHHH
T ss_conf             999999299989789999