HHsearch alignment for GI: 254780163 and conserved domain: PRK12724
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.84 E-value=9.3e-05 Score=53.35 Aligned_cols=87 Identities=23% Similarity=0.309 Sum_probs=51.9
Q ss_pred CCCEEEEECCCCHHHHHHHHHHH------HHCCCCEEEEEH---HHHHCCCCCCHHCCCCCHHCCCCCCCCCCHHHHHCC
Q ss_conf 74068861432003889999987------304773377206---886124653011047800025644431003555158
Q gi|254780163|r 506 PIGCYVFSGPTGVGKTEISKQLA------FALGVQLLRFDM---SEYMERHAVSRLIGAPPGYVGFGQGGILADSVDQNP 576 (798)
Q Consensus 506 P~g~flf~GptGvGKTelak~la------~~~~~~lir~dm---sey~e~~~vs~LiGappGYvG~~egg~Lte~vr~~P 576 (798)
T Consensus 222 ~~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv-~vv~~~-~el~~al~~~~ 299 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPF-YPVKDI-KKFKETLARDG 299 (432)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCE-EEEECH-HHHHHHHHHCC
T ss_conf 7629999899998889999999999999749927999526653779999999999859945-995189-99999998569
Q ss_pred CEEEEECCHHHCCHHHHH
Q ss_conf 517774044550289999
Q gi|254780163|r 577 YSVVLLDEIEKSHPDVLN 594 (798)
Q Consensus 577 ~sVvl~DEiEKAh~~v~~ 594 (798)
T Consensus 300 ~DlILIDTAGrS~rd~~~ 317 (432)
T PRK12724 300 SELILIDTAGYSHRNLEQ 317 (432)
T ss_pred CCEEEEECCCCCCCCHHH
T ss_conf 999999299989789999